View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_14 (Length: 405)
Name: NF14438_high_14
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 13878439 - 13878078
Alignment:
| Q |
17 |
catgcatatccatatgtctaatgatgatgatgaccaccatcgtttcgtgatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaat |
116 |
Q |
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| T |
13878439 |
catgcatatccatatgtctaatgatgatgatgaccaccatcgtttcgttatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaat |
13878340 |
T |
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| Q |
117 |
gacaggatctttgacaagcccattgaatcaacttgcctagaaacccacctaatgcttctctctttacctcaacacccaacaccaacaccaacacccaacc |
216 |
Q |
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| T |
13878339 |
gacaggatctttgacaagcccattgaatcaacttgcctagaaacccacctaatgcttctctctttacctcaacacccaacaccaa------cacccaacc |
13878246 |
T |
|
| Q |
217 |
tcatcaaatccctctttccgaaaaacatccccatacgaataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattataa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878245 |
tcatcaaatccctctttccgaaaaacatccccatacgaataatcaaaatatacggtcattgtaatggtattttatgtttggaatatgattatgattatac |
13878146 |
T |
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| Q |
317 |
cctaagcttaattctttggaaccctaccactagagaggtccattttgtacccccacatccagcctcct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13878145 |
cctaagcttaattctttggaaccctaccactagagaggtccattttgtacccccacatccagcctcct |
13878078 |
T |
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