View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14438_high_16 (Length: 399)
Name: NF14438_high_16
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 31688606 - 31688222
Alignment:
| Q |
12 |
attttgcttatatttcatttcaaatgaagtattacatagtttcatgacgaaaaatataggacaatttgctgaaacttagtgcaacaatggcttatttgag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688606 |
attttgcttatatttcatttcaaatgaagtattacatagtttcatgacgaaaaaaataggacaatttgctgaaacttagtgcaacaatggcttatttgag |
31688507 |
T |
|
| Q |
112 |
tttcttctttgacggcatcaatgagctttgagaaacctcggaggcttccttgtattgaatatcattagataaatttgataaactattacaataatctact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688506 |
tttcttctttgacggcatcaatgagctttgagaaacctcggaggcttccttgtattgaatatcattagataaatttgataaactattacaataatctact |
31688407 |
T |
|
| Q |
212 |
tcaatggctccataagtaaataaaattgtaaatatcctacatcactccaacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688406 |
tcaatggctccataagtaaataaaattgtaaatatcctacatcactccaacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaa |
31688307 |
T |
|
| Q |
312 |
tatatcaataagttaaatattgaattcactctattaagcacaccaaatagaataaagagcgatacctttaaaattctatcaatta |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688306 |
tatatcaataagttaaatattgaattcactctattaagcacaccaaatagaataaagagcgatacctttaaaattctatcaatta |
31688222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University