View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_19 (Length: 366)
Name: NF14438_high_19
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 4770612 - 4770278
Alignment:
| Q |
14 |
aagcaaaggttattcaatcccaacagatgacgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgat |
113 |
Q |
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| T |
4770612 |
aagcaaaggttattcaattccaacagacgatgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgat |
4770513 |
T |
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| Q |
114 |
tatcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaaga |
213 |
Q |
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| T |
4770512 |
tatcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaaga |
4770413 |
T |
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| Q |
214 |
atgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactgga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4770412 |
atgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactgga |
4770313 |
T |
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| Q |
314 |
aagggcttctacctcgatggactactcgttaagaa |
348 |
Q |
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| T |
4770312 |
aagggcttctacctcgatggactactcgttaagaa |
4770278 |
T |
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