View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_high_22 (Length: 358)

Name: NF14438_high_22
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_high_22
NF14438_high_22
[»] chr1 (14 HSPs)
chr1 (18-327)||(25023173-25023485)
chr1 (31-230)||(18628762-18628959)
chr1 (79-230)||(11871483-11871633)
chr1 (81-234)||(15309098-15309249)
chr1 (94-191)||(42241486-42241583)
chr1 (146-230)||(48563423-48563507)
chr1 (81-230)||(26759429-26759577)
chr1 (79-219)||(14393228-14393367)
chr1 (141-233)||(23777095-23777183)
chr1 (101-201)||(16256559-16256658)
chr1 (31-204)||(18650237-18650410)
chr1 (120-192)||(33323991-33324063)
chr1 (197-273)||(52148947-52149023)
chr1 (60-137)||(23170186-23170262)
[»] chr8 (9 HSPs)
chr8 (81-192)||(18003735-18003846)
chr8 (81-250)||(41566330-41566499)
chr8 (89-228)||(13399709-13399848)
chr8 (94-250)||(1029481-1029637)
chr8 (53-192)||(8869727-8869862)
chr8 (31-164)||(26450629-26450760)
chr8 (94-187)||(14442467-14442560)
chr8 (81-192)||(14575229-14575341)
chr8 (93-230)||(625172-625308)
[»] chr2 (10 HSPs)
chr2 (81-271)||(14694838-14695029)
chr2 (146-241)||(39711496-39711590)
chr2 (81-240)||(4724501-4724660)
chr2 (95-219)||(3388293-3388416)
chr2 (73-132)||(19182321-19182381)
chr2 (31-163)||(38002145-38002277)
chr2 (72-117)||(16740111-16740156)
chr2 (107-230)||(9848167-9848288)
chr2 (174-230)||(12419362-12419418)
chr2 (174-230)||(12431422-12431478)
[»] chr7 (12 HSPs)
chr7 (31-237)||(10623507-10623711)
chr7 (81-230)||(28033744-28033893)
chr7 (19-230)||(28002811-28003019)
chr7 (31-105)||(11669064-11669137)
chr7 (101-185)||(2620684-2620768)
chr7 (81-219)||(5907083-5907219)
chr7 (174-271)||(16994606-16994703)
chr7 (73-137)||(28301883-28301946)
chr7 (31-115)||(8271877-8271961)
chr7 (53-115)||(1764154-1764216)
chr7 (142-191)||(20118165-20118214)
chr7 (33-138)||(22543052-22543157)
[»] chr6 (7 HSPs)
chr6 (53-250)||(31946330-31946527)
chr6 (129-249)||(9535175-9535295)
chr6 (53-192)||(6257426-6257566)
chr6 (89-164)||(29333912-29333986)
chr6 (81-126)||(28553935-28553980)
chr6 (57-121)||(21427113-21427177)
chr6 (57-121)||(21479695-21479758)
[»] chr4 (12 HSPs)
chr4 (94-230)||(44311590-44311724)
chr4 (73-230)||(38011383-38011541)
chr4 (73-230)||(18402613-18402769)
chr4 (81-190)||(32338357-32338466)
chr4 (81-208)||(41421302-41421430)
chr4 (153-249)||(20650141-20650237)
chr4 (81-192)||(44206842-44206953)
chr4 (142-230)||(41839645-41839731)
chr4 (81-185)||(21081664-21081767)
chr4 (174-230)||(35260066-35260122)
chr4 (146-236)||(29847730-29847819)
chr4 (170-230)||(27433333-27433393)
[»] chr5 (7 HSPs)
chr5 (94-238)||(19932276-19932419)
chr5 (102-182)||(4950306-4950386)
chr5 (81-138)||(18274231-18274288)
chr5 (81-138)||(18864159-18864215)
chr5 (81-192)||(2770823-2770934)
chr5 (94-191)||(24351809-24351905)
chr5 (58-118)||(4157692-4157752)
[»] scaffold0003 (1 HSPs)
scaffold0003 (81-230)||(353080-353229)
[»] scaffold0042 (1 HSPs)
scaffold0042 (53-117)||(31248-31312)
[»] scaffold0178 (1 HSPs)
scaffold0178 (33-138)||(9307-9412)
[»] chr3 (11 HSPs)
chr3 (170-230)||(35740006-35740064)
chr3 (19-191)||(28421310-28421482)
chr3 (169-230)||(44558497-44558558)
chr3 (222-273)||(5450425-5450476)
chr3 (171-252)||(994327-994408)
chr3 (169-230)||(17766018-17766078)
chr3 (169-230)||(19067338-19067398)
chr3 (79-131)||(27080535-27080585)
chr3 (32-219)||(47005635-47005819)
chr3 (81-138)||(51537430-51537485)
chr3 (170-250)||(1020183-1020263)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 25023173 - 25023485
Alignment:
Q  18 gatctatcattataaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatct 117  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  25023173 gatctatccttataaaaattcactaatcacggcatgcaacctagcaaacctgcacacgggtgtgaaaccacgttccaaaaaatatgaagagtgaacatct 25023272  T
Q  118 gcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25023273 gcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaatatggtatcaaaatccaagtgccaacaactcactgaacaaagcaacaagcata 25023372  T
Q  218 aaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaacccataaacagatctgaaacatctgagagtc---gaagtcagacca 314  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||| ||||||||||||||   ||||||||||||    
T  25023373 aaggctctttcgaacatgaagtaccagagtgtaagtatacatgatgccttgaaatctatagacagatctggaacatctgagagtcgaagaagtcagacca 25023472  T
Q  315 ccaaacaccacat 327  Q
    |||||||||||||    
T  25023473 ccaaacaccacat 25023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 18628762 - 18628959
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaat 129  Q
    ||||||||||||||||| |   ||||||||||||||| ||  ||||| | ||||||||||||||||||| | |||| ||||||||||| || |||||| |    
T  18628762 aaaaattcactaatcacgggc-gcaacctagcgaacccgcgtacgggcgcgaaaccaggttacaaaaaagaatgaaaagtgaacatctacatagaacatt 18628860  T
Q  130 tagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcg 229  Q
    ||| || |   |||| |||||| |||||||||||| | |||| |||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||    
T  18628861 tagagtgtgattatggcgaatggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctgaacaa--caacaagcataaaagctctttcg 18628958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 11871633 - 11871483
Alignment:
Q  79 gtgaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaa 177  Q
    ||||||||| ||||||||||| | |||| ||||||||||||||||||| | || | || ||  |||| |||||| ||||||||| || | |||| |||||    
T  11871633 gtgaaaccatgttacaaaaaagaatgaaaagtgaacatctgcaaagaatagttggagtgtaattatggcgaatggatcgaccgctaacacggtaacaaaa 11871534  T
Q  178 tccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||||||  || ||||||||  || |||| ||||| ||||||||||    
T  11871533 tccaagtgccaacaactccctgaacaa--catcaagaataaaagctctttcga 11871483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 15309249 - 15309098
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| ||||||||||| || |||||||||| | |||||| |||| |||| ||||| | ||| |||||| |||||||||||| | |||| ||||||||    
T  15309249 gaaaccaagttacaaaaaacataaagagtgaacgtttgcaaaaaacagttagagttta-aaatggcgaatggatcgaccgccaacacggta-caaaatcc 15309152  T
Q  181 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacat 234  Q
    ||| |||||||  || ||||| | | || |||| ||| | ||||||||||||||    
T  15309151 aagcgccaacaactccctgaaaacatcagcaagtatagaagctctttcgaacat 15309098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 42241583 - 42241486
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 191  Q
    |||||||||||| ||||||||||| || |||||| |||| |||||  |||| | ||   |||||||||||| | |||| |||||||||||||||||||    
T  42241583 aaaaaatatgaaaagtgaacatctacatagaacatttagagtttaggtatggcaaaatgatcgaccgccaacacggtaacaaaatccaagtgccaaca 42241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 48563507 - 48563423
Alignment:
Q  146 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||| ||||| || ||| || |||||||||| ||||||||||||  || ||||||||| ||||||||||||  ||||||||||    
T  48563507 cgaatggatcgatcgtcaacatagtatcaaaattcaagtgccaacaactccctgaacaaaacaacaagcataatagctctttcga 48563423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 26759577 - 26759429
Alignment:
Q  81 gaaaccaggttacaaaaaat-atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    |||||||| ||||||||||  ||||| | |||| || |||| |||||  | || ||||| ||||| |||||| |||||||||||| |  ||| |||||||    
T  26759577 gaaaccagattacaaaaaaagatgaataatgaatatttgcagagaactgtaagagtttaaatatggcgaatggatcgaccgccaacacagtaacaaaatc 26759478  T
Q  180 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||||| || |||  |||  | ||||||||||| ||||||||||    
T  26759477 caagtgccaacagctccctggtcaa--cgacaagcataaaagctctttcga 26759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 14393367 - 14393228
Alignment:
Q  79 gtgaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaa 177  Q
    ||||||| ||||||||||||| | |||| ||||||||| | ||||||||| |||| || || ||||| | |||| || ||| || || | || | |||||    
T  14393367 gtgaaacaaggttacaaaaaagaatgaaaagtgaacatttacaaagaacagttagagtgtaaatatggcaaatggattgactgcaaacacgggaacaaaa 14393268  T
Q  178 tccaagtgccaacagttcactgaacaaagcaacaagcataaa 219  Q
    |||||| |||||||| || ||||||||  |||||||||||||    
T  14393267 tccaagcgccaacagctccctgaacaa--caacaagcataaa 14393228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 23777183 - 23777095
Alignment:
Q  141 tatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaaca 233  Q
    |||| |||||| |||||||||||| | |||| |||||||||||||||||||| || ||||||||  || |||||||||| | |||||||||||    
T  23777183 tatggcgaatggatcgaccgccaacacggta-caaaatccaagtgccaacagctccctgaacaa--cagcaagcataaa-gttctttcgaaca 23777095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 16256658 - 16256559
Alignment:
Q  101 atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactga 200  Q
    ||||| |||||||||| ||| ||||||||||| ||||| ||||| |||||| ||||||  |||| | |||  |||||| ||||||||||||| || ||||    
T  16256658 atgaaaagtgaacatcagcagagaacaattagagtttaaatatggcgaatggatcgacaaccaacacggtgacaaaat-caagtgccaacagctccctga 16256560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 18650237 - 18650410
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaat--atgaagagtgaacatctgcaaagaacaa 128  Q
    |||||| |||||||||||| | |||||  |||||||| ||  ||||| | ||||||| |||||||||||   ||||| ||||||||| || | |||||||    
T  18650237 aaaaatccactaatcacag-acgcaactcagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaaagaatgaaaagtgaacat-tgtagagaacaa 18650334  T
Q  129 ttagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaa 204  Q
    | || || || | ||| |||||| || ||||||||  ||| ||||  ||||||||||||||||| || ||||||||    
T  18650335 taagagtgtacaaatggcgaatggattgaccgccagcatgatatccgaatccaagtgccaacagctccctgaacaa 18650410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 33324063 - 33323991
Alignment:
Q  120 aaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacag 192  Q
    ||||||||||||| |||||  |||| |||||| |||||||||||| |  ||| | ||||||||||||||||||    
T  33324063 aaagaacaattagagtttaattatggcgaatggatcgaccgccaacacagtaacgaaatccaagtgccaacag 33323991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 52149023 - 52148947
Alignment:
Q  197 ctgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaacc 273  Q
    |||||||||||| |||||| ||| |||||||||| ||| || ||| ||||||||  |||||| |||| |||||||||    
T  52149023 ctgaacaaagcagcaagcaaaaaagctctttcgagcatcaaataccagagtgtagctagacaagatgacttgaaacc 52148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 23170262 - 23170186
Alignment:
Q  60 agcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt 137  Q
    |||||| ||||  ||||||| |||| || ||||||||||||||||| | |||| || ||| |||||||||||||||||    
T  23170262 agcgaatctgcgtacgggtgcgaaatcaagttacaaaaaatatgaaaaatgaatat-tgcgaagaacaattagggttt 23170186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 18003846 - 18003735
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| ||||||||||||||||| ||||||| |||||| ||||||||||| |||||  |||||| ||||||||||||||||| | |||| ||||||||    
T  18003846 gaaaccaagttacaaaaaatatgaaaagtgaacgtctgcatagaacaattagagtttaggtatgacaaatgaatcgaccgccaacacggtaacaaaatcc 18003747  T
Q  181 aagtgccaacag 192  Q
    ||||||||||||    
T  18003746 aagtgccaacag 18003735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 41566499 - 41566330
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| ||||||||||||||||  ||| ||| | ||| || |||| |||| ||||| | | ||| |||| |||||||||||| | ||||||||||||     
T  41566499 gaaaccaagttacaaaaaatatgagaagttaacttttgccaataacagttagagtttaaaaacgacaaatggatcgaccgccaacacggtatcaaaatct 41566400  T
Q  181 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 250  Q
    ||||| |||||| || ||| ||||  ||||||||||||  |||||||||| ||| || ||| ||||||||    
T  41566399 aagtggcaacagctccctgcacaagacaacaagcataacagctctttcgagcattaaataccagagtgta 41566330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 13399709 - 13399848
Alignment:
Q  89 gttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgcca 188  Q
    |||||||||||||||| || ||||| ||||||||||| | |||||||||  ||||| |||||| || ||||||||| |  | |||| |||||||||| ||    
T  13399709 gttacaaaaaatatgatgaatgaacgtctgcaaagaaaagttagggttttaatatggcgaatggattgaccgccaacactgaatcagaatccaagtgtca 13399808  T
Q  189 acagttcactgaacaaagcaacaagcataaaggctctttc 228  Q
    || | || |||||||||||| |||||  ||| ||||||||    
T  13399809 accgctctctgaacaaagcagcaagctaaaaagctctttc 13399848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 1029481 - 1029637
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagt 193  Q
    |||||||||||  ||| ||| | ||| || |||| |||| ||||| | | | |||||| |||||||||||| ||||||||||||| ||||||||||||      
T  1029481 aaaaaatatgagaagtaaacctttgccaataacacttagagtttaaaaacgtcgaatggatcgaccgccaacatggtatcaaaattcaagtgccaacaac 1029580  T
Q  194 tcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 250  Q
    || ||| ||||| ||  ||||||||  |||||||||| ||| || ||| ||||||||    
T  1029581 tccctgcacaaaacagtaagcataatagctctttcgagcatcaaataccagagtgta 1029637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 8869727 - 8869862
Alignment:
Q  53 gcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatga 152  Q
    |||||| | |||||| ||| ||||| | |||||||||||| ||||    |||| ||||||||| ||  |||||||||||||||||| || ||  |||||     
T  8869727 gcaacccaacgaacccgcatacgggcgcgaaaccaggttaaaaaa----tgaaaagtgaacatttgtgaagaacaattagggtttaaatctggtgaatgg 8869822  T
Q  153 atcgaccgccaaaatggtatcaaaatccaagtgccaacag 192  Q
    |||||| | ||| || ||||||||||||||||| ||||||    
T  8869823 atcgactgtcaacatagtatcaaaatccaagtgtcaacag 8869862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 26450629 - 26450760
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaatt 130  Q
    |||||||| ||||||||   |||||| | |||||||||||  ||||| | ||||||  ||||||||||| ||||||||  |||| ||| ||||||| |||    
T  26450629 aaaaattcgctaatcacg--atgcaatcgagcgaacctgcgtacgggcgcgaaacccagttacaaaaaagatgaagagcaaacaactgtaaagaacgatt 26450726  T
Q  131 agggtttatatatgacgaatgaatcgaccgccaa 164  Q
     ||||||| || ||||||||| || |||||||||    
T  26450727 ggggtttaaatttgacgaatggattgaccgccaa 26450760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 14442467 - 14442560
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaag-aacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgcc 187  Q
    ||||| |||||| |||||| || ||||||| |||||||| |||||| | |||||||||| || ||||||||| | |||| |||||||||||||||    
T  14442467 aaaaagtatgaaaagtgaatat-tgcaaaggaacaattaaggtttaaagatgacgaatggattgaccgccaacacggtaacaaaatccaagtgcc 14442560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 14575229 - 14575341
Alignment:
Q  81 gaaaccaggttacaaaaaata-tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    |||||||| |||||||||| | |||| || |||||||| || ||||||| ||  || ||  ||||||||||| |||||||||||| | || | ||| |||    
T  14575229 gaaaccagattacaaaaaaaaatgaaaagggaacatcttcatagaacaactaaagtgtagttatgacgaatggatcgaccgccaacacggcaacaacatc 14575328  T
Q  180 caagtgccaacag 192  Q
    |||||||||||||    
T  14575329 caagtgccaacag 14575341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 625172 - 625308
Alignment:
Q  93 caaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 191  Q
    ||||||||||||| | ||||||| |||||| ||||| ||| |||||| | ||| | |||| || |||||||||  |||||  ||||||||||| ||||||    
T  625172 caaaaaatatgaaaaatgaacat-tgcaaaagaacatttaaggtttaaaaatggcaaatggattgaccgccaacgtggtaataaaatccaagt-ccaaca 625269  T
Q  192 gttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    | ||  |||||| | || |||||||||| ||||||||||    
T  625270 gctccttgaacacaccagcaagcataaaagctctttcga 625308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 14694838 - 14695029
Alignment:
Q  81 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    ||||||||||||||||||| |||||  ||  |||||||   ||||| ||||||||||||  |  | |||||| ||||||||| || |||||||||||||     
T  14694838 gaaaccaggttacaaaaaaatatgacaagctaacatctttgaagaataattagggtttaatttcggcgaatggatcgaccgcaaacatggtatcaaaatt 14694937  T
Q  180 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaa 271  Q
    ||||||||| ||| ||  |||||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||| ||  ||||||||    
T  14694938 caagtgccatcagctccatgaacaaagcaacaagcataaaagctctttcgagcatgaattaccagagtgtaggtagacaagacaccttgaaa 14695029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 39711496 - 39711590
Alignment:
Q  146 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtac 241  Q
    |||||| || ||||||||| | |||| |||||||||||||||||||| || |||||||||||| ||||||||||  ||||||| | ||||||||||    
T  39711496 cgaatggatagaccgccaacacggtaacaaaatccaagtgccaacagctctctgaacaaagcagcaagcataaa-actctttcaagcatgaagtac 39711590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 4724660 - 4724501
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| ||||||||||||||||   || ||||||||| ||||||||||| ||||||  |  |||||||| || |||||| ||    ||| |||| | |    
T  4724660 gaaaccaagttacaaaaaatatgagaggtaaacatctgccaagaacaattaaggtttaagttcgacgaatggattgaccgctaactcagtaacaaagttc 4724561  T
Q  181 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagta 240  Q
    ||||| ||||| |||  ||| ||||||| |||||||||| |||||||||| ||| |||||    
T  4724560 aagtgtcaacaattccatgatcaaagcagcaagcataaaagctctttcgagcattaagta 4724501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 3388416 - 3388293
Alignment:
Q  95 aaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagtt 194  Q
    ||||||||||| ||||||||| ||| || |||| |||||||||| ||  | |||||| ||| |||||||| |||  |||||||||||||||||||  | |    
T  3388416 aaaaatatgaaaagtgaacat-tgccaaaaacagttagggtttaaattcggcgaatggatcaaccgccaacatgacatcaaaatccaagtgccaattgct 3388318  T
Q  195 cactgaacaaagcaacaagcataaa 219  Q
    |  |||| |||||| ||||||||||    
T  3388317 ctatgaataaagcagcaagcataaa 3388293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 19182381 - 19182321
Alignment:
Q  73 acgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattag 132  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||    
T  19182381 acgggtgcgaaaccaagttacaaaaaagtatgaagagtgaacatctgcagagaccaattag 19182321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 38002277 - 38002145
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaat 129  Q
    ||||| |||||||||||||   |||||| ||| |||| ||  ||||| | ||||||| ||||||||||| |||||| ||||||||||| || ||||  ||    
T  38002277 aaaaaatcactaatcacaggc-gcaacccagcaaacccgcgtacgggcgcgaaaccaagttacaaaaaaatatgaaaagtgaacatctacatagaatcat 38002179  T
Q  130 tagggtttatatatgacgaatgaatcgaccgcca 163  Q
    ||| ||||| | ||| |||||| |||||||||||    
T  38002178 tagagtttaaaaatggcgaatggatcgaccgcca 38002145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 16740111 - 16740156
Alignment:
Q  72 cacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatct 117  Q
    |||||||| |||||||  |||||||||||||||||||| |||||||    
T  16740111 cacgggtgcgaaaccaaattacaaaaaatatgaagagtaaacatct 16740156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 9848288 - 9848167
Alignment:
Q  107 agtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaag 206  Q
    |||||||||||||| ||| ||| ||  || ||  ||||||||||| ||||| |||||| | || | ||| |||||||||||||||  || ||||||||      
T  9848288 agtgaacatctgcatagagcaactaaagtgtagttatgacgaatggatcgatcgccaacacggcaacaacatccaagtgccaacaactccctgaacaa-- 9848191  T
Q  207 caacaagcataaaggctctttcga 230  Q
    ||||||| ||||| || |||||||    
T  9848190 caacaagtataaacgccctttcga 9848167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 12419362 - 12419418
Alignment:
Q  174 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||||||| ||| || |||||  ||||| |||||||||| ||||||||||    
T  12419362 aaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcga 12419418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 12431422 - 12431478
Alignment:
Q  174 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||||||| ||| || |||||  ||||| |||||||||| ||||||||||    
T  12431422 aaaatccaagtgccatcagctccctgaatcaagcagcaagcataaaagctctttcga 12431478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 10623711 - 10623507
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaatt 130  Q
    |||||||||||||||||||   ||||||||| |||||| |  |||||   |||||||| |||||||||||||||| | ||||||| || |||||||||||    
T  10623711 aaaaattcactaatcacaggc-gcaacctagtgaacctacgtacgggcacgaaaccagattacaaaaaatatgaaaaatgaacatatgtaaagaacaatt 10623613  T
Q  131 agggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    | ||||||| | || |||||| |||||| ||||| |  || ||||||| ||| ||||||||  || |||||||||||| ||||||| || ||||||||||    
T  10623612 aaggtttatttttggcgaatggatcgactgccaacacagtgtcaaaatacaattgccaacaactccctgaacaaagcagcaagcatgaa-gctctttcga 10623514  T
Q  231 acatgaa 237  Q
     ||||||    
T  10623513 gcatgaa 10623507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 28033744 - 28033893
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| |||||||||||||| |  | ||||||| ||||||||| | || || |||| ||||||||||||||||||||||||| | |  | |||||| |    
T  28033744 gaaaccaagttacaaaaaatataataaatgaacatttgcaaagaatatttgggttttaaatatgacgaatgaatcgaccgccaacacgtcaccaaaattc 28033843  T
Q  181 aagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||| || ||| || ||||| | || | |||||||||| ||||||||||    
T  28033844 aagtgtcagcagctctctgaaaacagtagcaagcataaaagctctttcga 28033893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 28003019 - 28002811
Alignment:
Q  19 atctatcattataaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctg 118  Q
    ||||||||| | |||||| |||||||||| | | ||||||||||||||| ||  ||||| |  |||| | ||||||||||||||||  ||| ||| | ||    
T  28003019 atctatcataacaaaaatccactaatcacgg-acgcaacctagcgaacccgcgtacgggcgcaaaactatgttacaaaaaatatgagaagtaaacctttg 28002921  T
Q  119 caaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataa 218  Q
      || || | |||||||||  | | | |||||| || ||||||||| | |||||||||||| |||||||||  | || |||||||||||| |||||||||    
T  28002920 tcaataatagttagggtttgaaaacggcgaatggattgaccgccaacacggtatcaaaatctaagtgccaa--gctccctgaacaaagcagcaagcataa 28002823  T
Q  219 aggctctttcga 230  Q
    | ||||||||||    
T  28002822 aagctctttcga 28002811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 11669064 - 11669137
Alignment:
Q  31 aaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaa 105  Q
    ||||||||||||||||||| | |||||| |||||||| | | ||||| |||||| ||||||||||||||||||||    
T  11669064 aaaaattcactaatcacag-acgcaacccagcgaacccgtatacgggcgtgaaatcaggttacaaaaaatatgaa 11669137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 2620768 - 2620684
Alignment:
Q  101 atgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtg 185  Q
    ||||| ||||||| | |||| ||||||||||| | ||| |||||  ||||| |||| |||||||||||||| |||||||||||||    
T  2620768 atgaaaagtgaacgtttgcagagaacaattagagcttaaatatggagaatggatcgtccgccaaaatggtaacaaaatccaagtg 2620684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 5907219 - 5907083
Alignment:
Q  81 gaaaccaggttacaaaaaa--tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaat 178  Q
    |||||||||||||||||||  |||||| |||||| ||||||| | ||   ||||  |||| ||||| | |||||||||||| |||| | |||| ||||||    
T  5907219 gaaaccaggttacaaaaaaagtatgaaaagtgaaaatctgcataaaattgttag--tttaaatatggcaaatgaatcgaccaccaacacggtaacaaaat 5907122  T
Q  179 ccaagtgccaacagttcactgaacaaagcaacaagcataaa 219  Q
    ||||||||||| || || |||| |||  |||||||||||||    
T  5907121 ccaagtgccaatagctccctgatcaa--caacaagcataaa 5907083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 16994703 - 16994606
Alignment:
Q  174 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaa 271  Q
    ||||| ||||||||||||  ||  |||||||||||||||||||||| ||||||| || ||| || ||| |||||||| | ||||| || | |||||||    
T  16994703 aaaatacaagtgccaacaactccatgaacaaagcaacaagcataaaagctcttttgagcatcaaataccagagtgtaggcagacaagacgacttgaaa 16994606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 28301883 - 28301946
Alignment:
Q  73 acgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt 137  Q
    ||||| ||||||||| ||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  28301883 acgggagtgaaaccaagttacaaaaaatatgataagggaacat-tgcaaagaacaaatagggttt 28301946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 8271961 - 8271877
Alignment:
Q  31 aaaaattcactaatcac-agcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaa-aaaatatgaagagtgaacat 115  Q
    |||||||||||||| || ||||  ||||| |||||||||| | ||||| |||||| |||||||||| |||||||||| |||||||||    
T  8271961 aaaaattcactaattacgagca--caacccagcgaacctgtatacgggcgtgaaatcaggttacaaaaaaatatgaaaagtgaacat 8271877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 1764154 - 1764216
Alignment:
Q  53 gcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacat 115  Q
    ||||||||||||||| ||  ||||| || ||||||||| |||||||| ||||| |||||||||    
T  1764154 gcaacctagcgaaccggcgtacgggagtcaaaccaggtaacaaaaaagatgaaaagtgaacat 1764216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 20118165 - 20118214
Alignment:
Q  142 atgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 191  Q
    |||||||||  |||||||||||| | |||| |||||||||||||||||||    
T  20118165 atgacgaatagatcgaccgccaatacggtaacaaaatccaagtgccaaca 20118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 22543157 - 22543052
Alignment:
Q  33 aaattcactaatcaca-gcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaatt 130  Q
    |||||||||||||||| |||  |||||||||||||| ||  || |||| ||||| | ||||||||||| ||||||||||||| || |||||  |||| |     
T  22543157 aaattcactaatcacatgca--caacctagcgaacccgcgtactggtgcgaaactaagttacaaaaaaatatgaagagtgaaaatgtgcaaccaacagtg 22543060  T
Q  131 agggttta 138  Q
    ||||||||    
T  22543059 agggttta 22543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 31946527 - 31946330
Alignment:
Q  53 gcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatga 152  Q
    |||||| |||||||| ||  ||||| | ||||||| ||||||||||||||||  ||| ||| | ||| || ||||||||| |||||   | ||||||||     
T  31946527 gcaacccagcgaacccgcgtacgggcgcgaaaccaagttacaaaaaatatgagaagttaacctttgccaataacaattagagtttaagaacgacgaatgg 31946428  T
Q  153 atcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 250  Q
    || | ||||||| | ||||||||||||||||||||||||| || ||| ||||  ||||||||||||  |||||||||| ||| || ||| ||||||||    
T  31946427 attgcccgccaacacggtatcaaaatccaagtgccaacagctccctgcacaagacaacaagcataacagctctttcgagcatcaaataccagagtgta 31946330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 9535295 - 9535175
Alignment:
Q  129 ttagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttc 228  Q
    |||||||||| || |||||||||||||||| ||||| ||||| ||||||| |   | ||||||| || || ||||||||| |||| ||||| | ||||||    
T  9535295 ttagggtttaaatctgacgaatgaatcgactgccaacatggtttcaaaattcgcattccaacagctccctaaacaaagcagcaagtataaaagatctttc 9535196  T
Q  229 gaacatgaagtactagagtgt 249  Q
    ||  ||||||||| |||||||    
T  9535195 gagtatgaagtaccagagtgt 9535175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 6257566 - 6257426
Alignment:
Q  53 gcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaa-aatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatg 151  Q
    |||||| |||||||| ||  ||||||| ||||||| ||||||||| |||||||| |||||| || || | ||||||  ||| ||||||| |||  || ||    
T  6257566 gcaacccagcgaacccgcgtacgggtgcgaaaccaagttacaaaataatatgaaaagtgaatatatgaatagaacatctagagtttataaatggtgagtg 6257467  T
Q  152 aatcgaccgccaaaatggtatcaaaatccaagtgccaacag 192  Q
     ||||| | |||| | |||||||||||||||||| ||||||    
T  6257466 gatcgatcaccaacacggtatcaaaatccaagtgtcaacag 6257426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 29333986 - 29333912
Alignment:
Q  89 gttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaa 164  Q
    ||||||||||||||||||||||||||||||| ||||| | |||  ||||| |  ||||||||| ||||||||||||    
T  29333986 gttacaaaaaatatgaagagtgaacatctgcgaagaatagtta-agtttaaaactgacgaatggatcgaccgccaa 29333912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 28553935 - 28553980
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaac 126  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||    
T  28553935 gaaaccatattacaaaaaagatgaagagtgaacaactgcaaagaac 28553980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 21427113 - 21427177
Alignment:
Q  57 cctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaa 121  Q
    ||||||||| | ||| | ||||| ||||||| |||| ||||||||||||||||||| || |||||    
T  21427113 cctagcgaatccgcatatgggtgcgaaaccaagttaaaaaaaatatgaagagtgaaaatgtgcaa 21427177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 21479695 - 21479758
Alignment:
Q  57 cctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaa 121  Q
    ||||||||||| ||  ||||||| ||||||| |||| ||||||||||||||||||| || |||||    
T  21479695 cctagcgaacccgcgtacgggtgcgaaaccaagtta-aaaaaatatgaagagtgaaaatgtgcaa 21479758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 44311590 - 44311724
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagt 193  Q
    |||||||||||||||||||| |||||||| |||| ||||| |||| | ||| |||||| |||||||||||  | ||||||||||||||||||||| |||     
T  44311590 aaaaaatatgaagagtgaacttctgcaaa-aacagttaggatttaaaaatggcgaatggatcgaccgccagcacggtatcaaaatccaagtgccatcagc 44311688  T
Q  194 tcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    || |||||| ||||| |||||||||  ||||||||||    
T  44311689 tccctgaac-aagcagcaagcataagagctctttcga 44311724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 38011383 - 38011541
Alignment:
Q  73 acgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggta 171  Q
    ||||| ||||||||| ||||||||||| |||||  ||| ||  ||||  || || ||||| |||||| | | | |||||| |||||||| ||| | ||||    
T  38011383 acgggcgtgaaaccaagttacaaaaaaatatgagaagtaaatctctgtcaataataattaaggtttaaaaaaggcgaatggatcgaccgtcaacacggta 38011482  T
Q  172 tcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
     |||||||||||||||||||| || |||||| ||||| |||||||||| ||||||||||    
T  38011483 acaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcga 38011541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 18402613 - 18402769
Alignment:
Q  73 acgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtat 172  Q
    ||||||| ||||||   |||||| ||||||||  ||||||||| || |||||||||||| ||||||  |  |||||||| |||||||||||| |   |||    
T  18402613 acgggtgcgaaacctaattacaagaaatatgacaagtgaacatatgaaaagaacaattaaggtttaatttcgacgaatggatcgaccgccaacacaatat 18402712  T
Q  173 caaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||| ||| |||| |||||  || |||||||||||| |||||||||| ||||||||||    
T  18402713 caaactcctagtgacaacaactccctgaacaaagcagcaagcataaa-gctctttcga 18402769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 32338466 - 32338357
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    ||||||| ||||||||||||||||| ||||||||| |||||| ||||| |||  || || | ||| |||||| || ||||||||| |||||| |||||||    
T  32338466 gaaaccaagttacaaaaaatatgaaaagtgaacat-tgcaaaagaacagttaaagtataaaaatggcgaatggattgaccgccaacatggtaacaaaatc 32338368  T
Q  180 caagtgccaac 190  Q
    |||||||||||    
T  32338367 caagtgccaac 32338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 41421302 - 41421430
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttt-atatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    ||||||| ||||||| ||| ||||| ||||||| | || |||||||| |||||| || ||| ||  || ||| |||||||||||| | |||| |||||||    
T  41421302 gaaaccaagttacaacaaagatgaaaagtgaacgtatgtaaagaacagttagggattcatacatagcgtatggatcgaccgccaacacggtaacaaaatc 41421401  T
Q  180 caagtgccaacagttcactgaacaaagca 208  Q
    || |||||||||| || ||||||||||||    
T  41421402 cacgtgccaacagctccctgaacaaagca 41421430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 20650237 - 20650141
Alignment:
Q  153 atcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgt 249  Q
    |||||| ||||| | |||| |||||||||||||||||||| || |||| ||||||| ||||| |||  |||||||||| |||  ||||| |||||||    
T  20650237 atcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgtaagagctctttcgagcatatagtaccagagtgt 20650141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 44206842 - 44206953
Alignment:
Q  81 gaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    ||||||||||||||||||| |||||| |||||| |||||   ||||||| ||| |||||   ||| |||||| |||||||||||| | |||| | |||||    
T  44206842 gaaaccaggttacaaaaaagtatgaaaagtgaaaatctgtcgagaacaactagagtttaagaatggcgaatggatcgaccgccaacacggtaac-aaatc 44206940  T
Q  180 caagtgccaacag 192  Q
    |||||||||||||    
T  44206941 caagtgccaacag 44206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 41839645 - 41839731
Alignment:
Q  142 atgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||||||| |||||||||||| | |||| ||||||||||||| ||| || || |||| |||  ||||||||  ||||||||||||||    
T  41839645 atgacgaatggatcgaccgccaacacggtaacaaaatccaagtgtcaatagctccctgatcaa--caacaagctaaaaggctctttcga 41839731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 21081767 - 21081664
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| |||||||||| ||||||||||||| |||| || ||| || |||| || ||  |||| |||||| |||||||||||| | |||| | ||||||    
T  21081767 gaaaccaagttacaaaaagtatgaagagtgaagatctacacagagcagttagagtgtaagtatggcgaatggatcgaccgccaacacggtaac-aaatcc 21081669  T
Q  181 aagtg 185  Q
    |||||    
T  21081668 aagtg 21081664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 35260066 - 35260122
Alignment:
Q  174 aaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||| ||||||||||||| |  |||||||||||| |||||||||| ||||||||||    
T  35260066 aaaattcaagtgccaacagctgcctgaacaaagcagcaagcataaaagctctttcga 35260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 29847730 - 29847819
Alignment:
Q  146 cgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatga 236  Q
    |||||| ||||||| |||| | ||||||||| ||||||||||| ||| || ||||||| | || |||||||||| ||| |||||| |||||    
T  29847730 cgaatggatcgaccaccaacacggtatcaaa-tccaagtgccagcagctccctgaacacaccagcaagcataaaagctttttcgagcatga 29847819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 27433393 - 27433333
Alignment:
Q  170 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||||||||||||||||| |  || ||||||||| |  |||||||||| ||||||||||    
T  27433393 tatcaaaatccaagtgccaaaaactccctgaacaaatccgcaagcataaaagctctttcga 27433333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 19932276 - 19932419
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatat-gacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacag 192  Q
    ||||||| |||| | ||||||| ||| |||||||||||||||||| |  | || ||||| |||||||||||| | ||||| ||| |||||||||||||||    
T  19932276 aaaaaatgtgaaaaatgaacat-tgcgaagaacaattagggtttaaaattcgatgaatggatcgaccgccaacacggtatgaaa-tccaagtgccaacag 19932373  T
Q  193 ttcactgaacaaagcaacaagcataaaggctctttcgaacatgaag 238  Q
     || |||||||| ||| |||||||||| |||||||||| |||||||    
T  19932374 ctccctgaacaatgcagcaagcataaaagctctttcgagcatgaag 19932419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 4950386 - 4950306
Alignment:
Q  102 tgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaa 182  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| | ||||| ||||||| ||| | |||||||||||||||    
T  4950386 tgaagaatgaacatctgccaagaacaattagggtttaaatatggcaaatgattcgaccgtcaacaaggtatcaaaatccaa 4950306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 18274288 - 18274231
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 138  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  18274288 gaaacaaggttacaaaacatatgaaaagtgaacatctgcgaagaacaattagggttta 18274231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 18864215 - 18864159
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 138  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18864215 gaaaccaatttacaaaaaatatgaagagtgaacat-tgcaaagaacaattagggttta 18864159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 2770823 - 2770934
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatcc 180  Q
    ||||||| ||||||||||||||||  ||| ||||| ||| || |||| |||| ||||| | | ||| |||| || ||||||||| | |||||||||||||    
T  2770823 gaaaccaagttacaaaaaatatgagaagttaacatttgccaataacagttagagtttaaaaacgacaaatggattgaccgccaacacggtatcaaaatcc 2770922  T
Q  181 aagtgccaacag 192  Q
    ||||| ||||||    
T  2770923 aagtgtcaacag 2770934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 24351905 - 24351809
Alignment:
Q  94 aaaaaatatgaagagtgaacatctgcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 191  Q
    |||||||||||||| | |||||||||||  |||| |||||||||| ||||||  |||| ||||||  |||| | | ||||||||||||||||||||||    
T  24351905 aaaaaatatgaaga-taaacatctgcaataaacacttagggtttaaatatgataaatggatcgacaaccaatacgttatcaaaatccaagtgccaaca 24351809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 4157752 - 4157692
Alignment:
Q  58 ctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatctg 118  Q
    |||||||||| ||  ||||| | |||| ||| |||||||||| ||||||||||||||||||    
T  4157752 ctagcgaacccgcgtacgggcgcgaaaacagattacaaaaaagatgaagagtgaacatctg 4157692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 353080 - 353229
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaa-gaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatc 179  Q
    ||||||| ||||||||||||||||| |||||| || |||||| ||||| ||| ||| || | ||| |||||| || |||||| || |||||| |||||||    
T  353080 gaaaccaagttacaaaaaatatgaaaagtgaatat-tgcaaaagaacagttaaggtatagaaatggcgaatggattgaccgctaacatggtaacaaaatc 353178  T
Q  180 caagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||| | || ||||| | | || |||||||| | ||||||||||    
T  353179 caagtgccaaccgctctctgaatacaccagcaagcatacaagctctttcga 353229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 31312 - 31248
Alignment:
Q  53 gcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaatatgaagagtgaacatct 117  Q
    ||||||||||||||| ||| ||||| | |||||||| |||||||||||||||||||||| |||||    
T  31312 gcaacctagcgaacccgcatacgggcgcgaaaccagattacaaaaaatatgaagagtgagcatct 31248  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 9307 - 9412
Alignment:
Q  33 aaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatctgcaaagaacaatta 131  Q
    |||||||||||||||||   ||||||||||||||| ||  ||||||| ||||||| ||||||||||| ||||||||||||| || |||||  |||| | |    
T  9307 aaattcactaatcacaggc-gcaacctagcgaacccgcgtacgggtgcgaaaccaagttacaaaaaactatgaagagtgaaaatgtgcaagcaacagtga 9405  T
Q  132 gggttta 138  Q
    |||||||    
T  9406 gggttta 9412  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 35740006 - 35740064
Alignment:
Q  170 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    ||||||||||||||||||||  | || ||||||||||||||||||||||| ||||||||||    
T  35740006 tatcaaaatccaagtgccaa--gctccctgaacaaagcaacaagcataaaagctctttcga 35740064  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 28421482 - 28421310
Alignment:
Q  19 atctatcattataaaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggttacaaaaaa-tatgaagagtgaacatct 117  Q
    ||||||||| | ||||||||||||||||||   ||||| | | |||||  ||  ||||| | |||||||| |||||||||| |||||| |||||| ||||    
T  28421482 atctatcataacaaaaattcactaatcacatg-tgcaatccaacgaactcgcgtacgggcgcgaaaccagattacaaaaaagtatgaaaagtgaaaatct 28421384  T
Q  118 gcaaagaacaattagggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaaca 191  Q
     || | ||||  ||| ||||| |||||  ||||| |||||||| ||| |  |||||||||||||||| ||||||    
T  28421383 acagataacagatagagtttaaatatggtgaatggatcgaccgtcaacactgtatcaaaatccaagtaccaaca 28421310  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 44558497 - 44558558
Alignment:
Q  169 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||||||||||||||||| ||| ||  |||||| |||| |||||||||| ||||||||||    
T  44558497 gtatcaaaatccaagtgccagcagctccgtgaacacagcagcaagcataaaagctctttcga 44558558  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 5450425 - 5450476
Alignment:
Q  222 ctctttcgaacatgaagtactagagtgtaagtagacatgatgccttgaaacc 273  Q
    ||||||||| |||||||||| |||||||| | || |||||||||||||||||    
T  5450425 ctctttcgagcatgaagtaccagagtgtaggcagccatgatgccttgaaacc 5450476  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 994408 - 994327
Alignment:
Q  171 atcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgtaag 252  Q
    ||||||||||||||| |||||  || || |||||| || |||| ||| | | |||||||| |||| ||||||||||||||||    
T  994408 atcaaaatccaagtggcaacaactccctaaacaaaacagcaagtatagaagttctttcgagcatggagtactagagtgtaag 994327  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 17766018 - 17766078
Alignment:
Q  169 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||||||||||||||||||||| || | |||  ||||| |||||||||| ||||||||||    
T  17766018 gtatcaaaatccaagtgccaacagctcccagaa-taagcagcaagcataaaagctctttcga 17766078  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 19067338 - 19067398
Alignment:
Q  169 gtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcga 230  Q
    |||||||||||||||||||||||| || | |||  ||||| |||||||||| ||||||||||    
T  19067338 gtatcaaaatccaagtgccaacagctcccagaa-taagcagcaagcataaaagctctttcga 19067398  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 27080535 - 27080585
Alignment:
Q  79 gtgaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaatta 131  Q
    |||||||||||||| |||||||  ||| ||||||||||||| |||||||||||    
T  27080535 gtgaaaccaggttaaaaaaaat--gaaaagtgaacatctgcgaagaacaatta 27080585  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 47005635 - 47005819
Alignment:
Q  32 aaaattcactaatcacagcatgcaacctagcgaacctgcacacgggtgtgaaaccaggtt-acaaaaaatatgaagagtgaacatctgcaaagaacaatt 130  Q
    |||||||||||||||||  | ||||||||||||||| ||  ||| | | ||||||| ||| | |||||| ||||| |||||| || |||| |||||||||    
T  47005635 aaaattcactaatcacat-acgcaacctagcgaacccgcgtacgagcgcgaaaccaagttcaaaaaaaagatgaaaagtgaatat-tgcagagaacaatt 47005732  T
Q  131 agggtttatatatgacgaatgaatcgaccgccaaaatggtatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaa 219  Q
    || || ||   | | |||||| |||||||| |||   ||||||  ||||||||||||||||| || |||| |||  |||||||||||||    
T  47005733 agagtgtaaccagggcgaatggatcgaccgtcaacgcggtatccgaatccaagtgccaacagctccctgagcaa--caacaagcataaa 47005819  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 51537430 - 51537485
Alignment:
Q  81 gaaaccaggttacaaaaaatatgaagagtgaacatctgcaaagaacaattagggttta 138  Q
    ||||||||||||| ||||||||||| ||||||||| ||| ||||||| ||||||||||    
T  51537430 gaaaccaggttac-aaaaatatgaaaagtgaacat-tgcgaagaacagttagggttta 51537485  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 1020263 - 1020183
Alignment:
Q  170 tatcaaaatccaagtgccaacagttcactgaacaaagcaacaagcataaaggctctttcgaacatgaagtactagagtgta 250  Q
    |||||||||||| |||  || || || || |||||| ||||||||||||| |||||||||  | ||||| |||||||||||    
T  1020263 tatcaaaatccatgtgtgaatagctccctaaacaaatcaacaagcataaaagctctttcgtgcttgaagaactagagtgta 1020183  T

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