View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_27 (Length: 308)
Name: NF14438_high_27
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 14370927 - 14370645
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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| T |
14370927 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacaacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
14370828 |
T |
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| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370827 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
14370728 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagtaaaaataattgaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14370727 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagtaaaaataattgaa |
14370645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 14242394 - 14242676
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14242394 |
catcagaaaccatgcattgaaccgttaactcaatgtgattttcataaagaacaacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
14242493 |
T |
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| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
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| T |
14242494 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctgagctcaagaaaaagaagaaccctttgtggaaacaaacaaaaacaacaaaccaa |
14242593 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagtaaaaataattgaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || || |||||||||||||||||||||| |
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| T |
14242594 |
gtaactgttttgagagctaaatcaaaaagggtaacaactttttcatctgaccaaccatttctataccagtaaaaataattgaa |
14242676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 41453415 - 41453688
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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||||||||| || ||| ||||| |||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| | | ||||||| |
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| T |
41453415 |
catcagaaaccaagcattgaactgttaactcgatgtgattttcataaagaacaacaatatcaaccacaaaacaataacatgaaacaaataaaaagaaaac |
41453514 |
T |
|
| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| | |||||||||| ||| ||| ||||| |
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| T |
41453515 |
acaccaagctctaaaaaagaatggaaaccttctttttctttgacctgaactgaagaaaaacaaaaaccctttgtagaaacaaacacaaacaacacaccaa |
41453614 |
T |
|
| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagtaaaa |
282 |
Q |
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| ||||||||| | ||||||||||||||| |||||| | ||||||||||||||| |||| |||||||| ||||| |
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| T |
41453615 |
gcaactgtttttaaagctaaatcaaaaagagtaacaaccttttcttctgaccaaccactagtataccaataaaa |
41453688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 41440252 - 41440525
Alignment:
| Q |
9 |
catcagaaatcatgcagtgaaccgttaactcaatgtgattttgataaagaacgacaatgtcaaccacaaaacaataacatgaaacaaaaagatagaaaac |
108 |
Q |
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||||||||| || ||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||||||||| | ||||||||||||||||| | | | ||||| |
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| T |
41440252 |
catcagaaaccaagcattgaactgttaactcaatgtgattttcatatagaacaacaatatcaaccacagagcaataacatgaaacaaataaaaataaaac |
41440351 |
T |
|
| Q |
109 |
acaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaa |
208 |
Q |
| |
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|||||||||||||| ||||||| |||| ||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||| ||||| |
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| T |
41440352 |
acaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctttgtggaaacaaacacaaacaacacaccaa |
41440451 |
T |
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| Q |
209 |
gtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagtaaaa |
282 |
Q |
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| ||||||||| | ||||||| |||| |||||| | ||||||||||||||| |||||| |||||||||||| |
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| T |
41440452 |
gcaactgtttttaatactaaatctaaaattgtaacaaccttttcttctgaccaaccacttgcataccagtaaaa |
41440525 |
T |
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