View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_29 (Length: 302)
Name: NF14438_high_29
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 4458224 - 4458498
Alignment:
| Q |
1 |
tacatactccgattcttcaattatagtgttcgacaaatatttccacttcattaagattgtcccttgctactttaatcatatccataacatgattatcaaa |
100 |
Q |
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| T |
4458224 |
tacatactccgattcttcaattatagtgttcgacaaatatttccacttcattaagattgtcccttgctactttaatcatatccataacatgattatcaaa |
4458323 |
T |
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| Q |
101 |
ttgtcttacgacattcacaaatattcagatccaatttcatacctttatacaacttcaagtaagaaatcataacaatattgtggtaacccataaaatgttt |
200 |
Q |
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| T |
4458324 |
ttgtcttacgacatttacaaatattcagattcaatttcatacctttatacaacttcaagtaagaaatcataacaatattgtggtaacccctacaatgttt |
4458423 |
T |
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| Q |
201 |
caccatactttcaatgtcaaatagattgatcaaatttggctctatcttgtcccaaacatcagtttcatcaccaac |
275 |
Q |
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| T |
4458424 |
caccatactttcaatgtcaaatagattgatcaaatttggctctatcttgccccaaacatcagtttcatcaccaac |
4458498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 17541805 - 17541877
Alignment:
| Q |
26 |
gtgttcgacaaatatttccacttcattaagattgtcccttgctactttaatcatatccataacatgattatca |
98 |
Q |
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| T |
17541805 |
gtgttcaacaaaaatttctacttcattcccattagcccttgcaactttaaccatatccataacatgattatca |
17541877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 17541895 - 17541999
Alignment:
| Q |
117 |
acaaatattcagatccaatttcatacctttatacaacttcaagtaagaaatcataacaatattgtggtaacccataaaatgtttcaccatactttcaatg |
216 |
Q |
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| T |
17541895 |
acaaatattgagatcagatgtcacacctttatacggcttcatgtaagacaatttagcaattatgtggtaacccttacaatgtttcaccaaactttcaatc |
17541994 |
T |
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| Q |
217 |
tcaaa |
221 |
Q |
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||||| |
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| T |
17541995 |
tcaaa |
17541999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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