View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_3 (Length: 590)
Name: NF14438_high_3
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 56 - 563
Target Start/End: Original strand, 43231490 - 43231970
Alignment:
| Q |
56 |
ccaaatgcttcaaatgaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacccgacagaaacaaccagccaacacatcga |
155 |
Q |
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| T |
43231490 |
ccaaatgcttcaaatcaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacacgacagaaacaaccagccaacgcatcga |
43231589 |
T |
|
| Q |
156 |
ttcagcaaattaaacaaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcatgggaatcaagtaaatacatgcatcaacccaag |
255 |
Q |
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| T |
43231590 |
ttcagcaaa-----caaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcgtgggaatcaagtaaatatatg---------agg |
43231675 |
T |
|
| Q |
256 |
aggtaatggatttggtcaaggaaaaagaaaaaggagaggaggagaataaagtgtggcaacagtgctataattagcnnnnnnnngttctattctagtggaa |
355 |
Q |
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| T |
43231676 |
aggtaatggatttggtcaagga-------------gaggaggagaataaagtgtggcaacagtgctataattagcaaaaaaaagttctattctagtggaa |
43231762 |
T |
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| Q |
356 |
attatcaggttgacgaaccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatatcttgaaaggt |
455 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43231763 |
attatcaggttgacgagccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatagcttgaaaggt |
43231862 |
T |
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| Q |
456 |
gctcaatgccgtttcaaataatttgaatgttttgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaattactcacaactctcc |
555 |
Q |
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| T |
43231863 |
gctcaatgccgtttcaaataatttgaatgtttcgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaatcactcacaactctcc |
43231962 |
T |
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