View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_30 (Length: 301)
Name: NF14438_high_30
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 32376275 - 32376542
Alignment:
| Q |
12 |
atgaatacgaagggttgtttcaaaagcatcaaataaatgttaagtttgagcgattttcaagnnnnnnnggatcgatttgaggtttattttaaatcggttt |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
32376275 |
atgaatacgaagggttgtttcaaaagcaccaaataaatgttaagtttgagtaattttcaagttttttttgatcgatttaaggtttattttaaatcagttt |
32376374 |
T |
|
| Q |
112 |
aaatgccaatatcccatcacggcatcaccaataatctcctaaccagcccaagtaaccagagagactttataatcattgttacaacttacaactagtacta |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376375 |
aaatgccaatatcccatc--------accaataatctcctaaccagcccaagtaacgagagagactttataatcattgttacaacttacaactagtacta |
32376466 |
T |
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| Q |
212 |
tgtcaacataatcatgagcagaaacattattaatatgtaaaatagccatatcaatggtcaaataatgtataaaaat |
287 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32376467 |
tgtcaacataatcatgagcagaaacattattaatacgtaaaatagccatatcaatggtcaaataatgtataaaaat |
32376542 |
T |
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