View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_35 (Length: 268)
Name: NF14438_high_35
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 9348577 - 9348331
Alignment:
| Q |
11 |
aagaacaaaccccaattcctcctcccgtgcttgacttcaacaaactctccatcctttatttaggaactgattacataatcgacgaaaacaagccccctag |
110 |
Q |
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| T |
9348577 |
aagaacaaaccccaattcctcctcacgtgcttgacttcaacaaactctctatcctttatttatgaactgatttcataatcgacgaagacaagccccctaa |
9348478 |
T |
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| Q |
111 |
aacggtccttgccgtcatgtgccatgggaaaaaccgtcttttactaggcagattaagtc--ctttccgtccg-atgatgattttcggtggcctcgacgag |
207 |
Q |
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| T |
9348477 |
tacggtccttgcggtcatgtgccatgggaaaaaccctcttttactcggaagattaagtcatcgtttcaaccgtcggatcattttccgtggcctcgacgag |
9348378 |
T |
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| Q |
208 |
cagtggaagctgatctccaaaaggtcatatgaaaatggagacatctg |
254 |
Q |
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| T |
9348377 |
cagtggaagctgatctccaaaaggtcatatgaatatggagacatctg |
9348331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 9370234 - 9369985
Alignment:
| Q |
11 |
aagaacaaaccccaattcctcctcccgtgcttgacttcaacaaactctccatcctttatttaggaactgattacataatcgacgaaaacaagccccctag |
110 |
Q |
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| T |
9370234 |
aagaacaaaccccaattcctcctcacgtgcttgacttcaacaaactctccatcctttatttaggaactgatttcataatcgacgaagacaagtaccctaa |
9370135 |
T |
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| Q |
111 |
aacggtccttgccgtcatgtgccatgggaaaaaccgtcttttactaggcagattaagtcctt------tccgtccgatgatgattttcggtggcctcgac |
204 |
Q |
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| T |
9370134 |
aacggtccttgccgtcatgtgccacgggaaaaaccctcttttactctgcagattaagtcattgttccaaccgtccgatgatgattttccgtggcctcaac |
9370035 |
T |
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| Q |
205 |
gagcagtggaagctgatctccaaaaggtcatatgaaaatggagacatctg |
254 |
Q |
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| T |
9370034 |
gagcagtggacgctgatctcccgatggtcatataaatatggagacatctg |
9369985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 9613498 - 9613539
Alignment:
| Q |
36 |
cgtgcttgacttcaacaaactctccatcctttatttaggaac |
77 |
Q |
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| T |
9613498 |
cgtgcttgacttcaacaaactctccgtccttcatttaggaac |
9613539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 9426113 - 9426071
Alignment:
| Q |
40 |
cttgacttcaacaaactctccatcctttatttaggaactgatt |
82 |
Q |
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| T |
9426113 |
cttgacttcaacaaactctccatcctcaatttaggaacagatt |
9426071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 9407906 - 9407861
Alignment:
| Q |
37 |
gtgcttgacttcaacaaactctccatcctttatttaggaactgatt |
82 |
Q |
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| T |
9407906 |
gtgcttgacttcaataaactctccatcctcaatttaggaaccgatt |
9407861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 9441354 - 9441399
Alignment:
| Q |
37 |
gtgcttgacttcaacaaactctccatcctttatttaggaactgatt |
82 |
Q |
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| T |
9441354 |
gtgcttgacttcaacaaactctccgtcctcaatttaggaacagatt |
9441399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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