View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_4 (Length: 565)
Name: NF14438_high_4
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Complemental strand, 41085917 - 41085376
Alignment:
| Q |
12 |
tccaagaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
111 |
Q |
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| T |
41085917 |
tccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
41085818 |
T |
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| Q |
112 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
211 |
Q |
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| T |
41085817 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
41085718 |
T |
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| Q |
212 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
311 |
Q |
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| T |
41085717 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
41085618 |
T |
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| Q |
312 |
gaactggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
411 |
Q |
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| T |
41085617 |
gaattggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
41085518 |
T |
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| Q |
412 |
ggaattcttgggattcttttgatctttcaactatggaagtcttctcttcaagttcaagaccttaatcaattgttaattagatctgattttccagatatat |
511 |
Q |
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| T |
41085517 |
ggaattcttgggattcttttgatctttcaactatggaagtcttctcttcaagttcaagaccttaatcaattgttaattagatctgattttccagatatat |
41085418 |
T |
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| Q |
512 |
aggtcaaatatttttcgtttat----atatatatgttgtatt |
549 |
Q |
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| T |
41085417 |
aggtcaaatatttttcgtttatattaatatatatgttgtatt |
41085376 |
T |
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