View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_42 (Length: 241)
Name: NF14438_high_42
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37323119 - 37322957
Alignment:
| Q |
1 |
aagataaacatgatagtagtaaatggtgttaggcgtagcagagccagcttgcgtgagacagagtcattaatataggaagcaaatctgcagggagagagcg |
100 |
Q |
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| T |
37323119 |
aagataaacatgatagtagtaaatggtgttaggcgtagcagagccagcttgcgtgagacagagtcattaatatgggaagcaaatctgcagggagagagcg |
37323020 |
T |
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| Q |
101 |
tgtgatatgctttcaatttggaaagccccattgctttgcattttcttgagaaaaagagagaga |
163 |
Q |
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| T |
37323019 |
tgtgatatgctttcaatttggaaagccccattgctttgcattttcttgagaaagagagagaga |
37322957 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 37322923 - 37322842
Alignment:
| Q |
155 |
agagagagaaagaatgaatgtgaatcttataggagtaatcaatatgtgtggcccgatagctagggagaacttgtagtagtacactac |
241 |
Q |
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| T |
37322923 |
agagagagagagaatgaatgtgaatcttataggagtaa-----atgtgtggcccgatagctagggagaacttgtagtagtacactac |
37322842 |
T |
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