View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_6 (Length: 483)
Name: NF14438_high_6
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 18513702 - 18513234
Alignment:
| Q |
18 |
ttgtgaccgcatgttgcagacaactacatgcaactgtaatattgcg--gccgcgtcatgtgcagttagaaacctttcttgtaacactcaaaatcttaaca |
115 |
Q |
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| T |
18513702 |
ttgtgaccgcatgttgcagacaactacatgcaactgtaatattgcgcggccgcgtcatgtgcagttagagacctttcttgtaacactcaaaatctta-ca |
18513604 |
T |
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| Q |
116 |
aattttacatatgcagtgcaacaaacaaaagaccagaacaaaacagaaaatcaatcttcttacgaattatt-gtttaaaactcacattaattgagaacca |
214 |
Q |
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| T |
18513603 |
aattttacatatgcagtgcaacaaacaaaagaccagaacaaaatagaaaatcaatcttcttatgaattatttgtttaaaactcacattaattgagaacca |
18513504 |
T |
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| Q |
215 |
ttcacttgtgaaaggataacactgaaaccatcttctgtaaccttgagtaaaccctgcaaaatataa-ttatgtgttatttctcatgcaaaattttatctt |
313 |
Q |
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| T |
18513503 |
ttcacttgtgaaaggataacactgaaaccatcttctgtaaccttgagtaaaccctgcaaaatataaattatgtgttatttctcatgcaaaattttatctt |
18513404 |
T |
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| Q |
314 |
ggacctataattagctcataattttcttaacaaacttcttggccaagtattacaggaatatatagttacctcggaagcatcacacacaatgagaccacca |
413 |
Q |
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| T |
18513403 |
ggacctataattagctcataattttcttaacaaacttcttggccaagtattacaggaatatatatttacctcggaagcatcacacacaatgagaccacca |
18513304 |
T |
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| Q |
414 |
tctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcc |
483 |
Q |
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| T |
18513303 |
tctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcc |
18513234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 18507092 - 18506987
Alignment:
| Q |
185 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactgaaaccatcttctgtaaccttgagtaaaccctgcaaaatataattat |
284 |
Q |
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| T |
18507092 |
ttgtctaaaacttacattaattgagaaccatttacttgtgaaaggataacactgaaaccatcttctgtaacctttagtaaaccctgcaaaatataattat |
18506993 |
T |
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| Q |
285 |
gtgtta |
290 |
Q |
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| T |
18506992 |
gtgtta |
18506987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 392 - 483
Target Start/End: Complemental strand, 18506827 - 18506736
Alignment:
| Q |
392 |
atcacacacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcc |
483 |
Q |
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| T |
18506827 |
atcacaaacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcc |
18506736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 379 - 483
Target Start/End: Complemental strand, 18486989 - 18486885
Alignment:
| Q |
379 |
ttacctcggaagcatcacacacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttc |
478 |
Q |
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| T |
18486989 |
ttaccttggtagcatcacaaacaatgagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttcc |
18486890 |
T |
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| Q |
479 |
attcc |
483 |
Q |
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| T |
18486889 |
attcc |
18486885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 18487167 - 18487071
Alignment:
| Q |
185 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactgaaac---catcttctgtaaccttgagtaaaccctgcaaaatat |
278 |
Q |
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| T |
18487167 |
ttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgcaaaatat |
18487071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 37046421 - 37046359
Alignment:
| Q |
185 |
ttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactgaaaccatct |
247 |
Q |
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| T |
37046421 |
ttgtttgaaactcacattaattgagaaacatttacttgggaaaggataacactgaaaccatct |
37046359 |
T |
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