View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_high_7 (Length: 462)

Name: NF14438_high_7
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_high_7
NF14438_high_7
[»] chr1 (10 HSPs)
chr1 (93-412)||(3136351-3136668)
chr1 (37-75)||(45652114-45652152)
chr1 (28-71)||(34808562-34808605)
chr1 (28-71)||(40613042-40613085)
chr1 (363-396)||(20815202-20815235)
chr1 (31-64)||(33153886-33153919)
chr1 (28-69)||(38448867-38448908)
chr1 (28-64)||(2817379-2817415)
chr1 (29-69)||(30798748-30798788)
chr1 (28-68)||(41926841-41926880)
[»] chr7 (7 HSPs)
chr7 (32-69)||(38858173-38858210)
chr7 (28-72)||(2618698-2618742)
chr7 (365-407)||(30659355-30659397)
chr7 (31-64)||(44868161-44868194)
chr7 (31-67)||(24225984-24226020)
chr7 (28-64)||(27833407-27833443)
chr7 (28-64)||(42227811-42227847)
[»] chr2 (7 HSPs)
chr2 (362-402)||(15185634-15185674)
chr2 (28-67)||(34903536-34903575)
chr2 (28-66)||(39384166-39384204)
chr2 (31-69)||(41778945-41778983)
chr2 (317-386)||(43904929-43904998)
chr2 (28-72)||(12124564-12124608)
chr2 (28-64)||(21558812-21558848)
[»] chr4 (10 HSPs)
chr4 (28-75)||(25978336-25978383)
chr4 (28-67)||(29568605-29568644)
chr4 (32-69)||(42316825-42316862)
chr4 (28-67)||(19908711-19908750)
chr4 (37-75)||(1701637-1701675)
chr4 (31-64)||(23160062-23160095)
chr4 (37-69)||(17320179-17320211)
chr4 (31-67)||(36479013-36479049)
chr4 (31-67)||(37254970-37255006)
chr4 (28-64)||(56551598-56551634)
[»] chr8 (7 HSPs)
chr8 (31-69)||(21557455-21557493)
chr8 (28-67)||(9070977-9071016)
chr8 (28-67)||(27750907-27750946)
chr8 (28-73)||(15438472-15438517)
chr8 (28-73)||(15529776-15529821)
chr8 (28-69)||(19778084-19778125)
chr8 (28-64)||(42208475-42208511)
[»] chr3 (4 HSPs)
chr3 (28-71)||(39869806-39869849)
chr3 (32-68)||(8747238-8747274)
chr3 (37-69)||(15507272-15507304)
chr3 (28-68)||(53633619-53633659)
[»] scaffold0204 (1 HSPs)
scaffold0204 (28-69)||(16170-16211)
[»] scaffold0040 (1 HSPs)
scaffold0040 (28-69)||(53778-53819)
[»] scaffold0026 (1 HSPs)
scaffold0026 (28-69)||(75344-75385)
[»] chr6 (3 HSPs)
chr6 (32-69)||(10778863-10778900)
chr6 (31-63)||(1794958-1794990)
chr6 (28-64)||(31971548-31971584)
[»] chr5 (5 HSPs)
chr5 (28-69)||(34702509-34702550)
chr5 (32-64)||(8882405-8882437)
chr5 (31-67)||(26409275-26409311)
chr5 (31-67)||(26655486-26655522)
chr5 (31-67)||(26927071-26927107)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 93 - 412
Target Start/End: Complemental strand, 3136668 - 3136351
Alignment:
Q  93 ttagtgtaaagttattttacatactgttatatattatgataagataacatgcatatcatttaataaacataacaagtttacataatagatgataattaat 192  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  3136668 ttagtgtaaagttattttacgtattgttatatattatgataagataacatgcatatcatttaataaacataacaagtttacataatagat---aattaat 3136572  T
Q  193 ttaagaatggaaaactccacataaatgaaagacaagcagataataagttgtgtcgctaatccttt-cttgaaaaattcaatcctcttataaattacatcc 291  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3136571 ttaagaatggaaaactccacatgaatgaaagacaagcggataataagttgtgtcgctaatcctttgcatgaaaaattcaatcctcttataaattacatcc 3136472  T
Q  292 ttaggcctaagagacaaaacattattatacatgatcatttcaactttttgtatattatccacaacttctaatgttagaaagtcaaaaatgtcaaacacaa 391  Q
    || | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||| |||||||    
T  3136471 ttggacctaagagacaaaacattattatccatgatcatttcaactttttgtataatatccacaacttctaatgctaggaagtaaaaaatgtccaacacaa 3136372  T
Q  392 atgatgtaaaagcataccgat 412  Q
    |||||||||||||||| ||||    
T  3136371 atgatgtaaaagcatatcgat 3136351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 45652152 - 45652114
Alignment:
Q  37 tgcataatatatgtaaggtccgaggttcgaatctcagac 75  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  45652152 tgcataatatatgtaaggtccgaggttcgaacctcagac 45652114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 34808605 - 34808562
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctc 71  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||    
T  34808605 taaggacaatgcataatatatgcaaggttcgaggttcgaatctc 34808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 40613042 - 40613085
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctc 71  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||    
T  40613042 taaggacaatgcataatatatgcaaggtccggggttcgaatctc 40613085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 20815235 - 20815202
Alignment:
Q  363 tgttagaaagtcaaaaatgtcaaacacaaatgat 396  Q
    |||||| |||||||||||||||||||||||||||    
T  20815235 tgttaggaagtcaaaaatgtcaaacacaaatgat 20815202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 33153919 - 33153886
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttc 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  33153919 ggacaatgcataatatatgtaaggtccgaggttc 33153886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 38448908 - 38448867
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  38448908 taaggacaatgcataatatatgcaaggtccggggttcgaatc 38448867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 2817415 - 2817379
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  2817415 taaggacaatgcataatatatgtaaggtccgaagttc 2817379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 30798788 - 30798748
Alignment:
Q  29 aaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    ||||||| ||||||||||||||||| |||| ||||||||||    
T  30798788 aaggacaatgcataatatatgtaagatccggggttcgaatc 30798748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 41926841 - 41926880
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaat 68  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  41926841 taaggacaatgcataatatatgtaaggtccg-ggttcgaat 41926880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 38858210 - 38858173
Alignment:
Q  32 gacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38858210 gacagtgcataatatatgtaaggtccgaggttcgaatc 38858173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 2618698 - 2618742
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctca 72  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||    
T  2618698 taaggacaatgcataatatatgcaaggtccggggttcgaatctca 2618742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 30659397 - 30659355
Alignment:
Q  365 ttagaaagtcaaaaatgtcaaacacaaatgatgtaaaagcata 407  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||    
T  30659397 ttaggaagtcaaaaatgtcaaaaacaaatgatataaaagcata 30659355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 44868194 - 44868161
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttc 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  44868194 ggacaatgcataatatatgtaaggtccgaggttc 44868161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 24226020 - 24225984
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  24226020 ggacaatgcataaaatatgtaaggtccgaggttcgaa 24225984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 27833443 - 27833407
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| |||||||||||||||||||||| |||||    
T  27833443 taaggacaatgcataatatatgtaaggtccggggttc 27833407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 42227847 - 42227811
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  42227847 taaggacaatgcataatatatgtaaggttcgaggttc 42227811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 15185674 - 15185634
Alignment:
Q  362 atgttagaaagtcaaaaatgtcaaacacaaatgatgtaaaa 402  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  15185674 atgttagaaagtcaaaaatgtcaaacacaaatgatataaaa 15185634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 34903536 - 34903575
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  34903536 taaggacagtgcataatatatgcaaggtctgaggttcgaa 34903575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 39384204 - 39384166
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcga 66  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  39384204 taaggacaatgcataatatatgtaaggtctgaggttcga 39384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 41778983 - 41778945
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  41778983 ggacaatgcataatatatgcaaggtccgaggttcgaatc 41778945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 43904929 - 43904998
Alignment:
Q  317 tatacatgatcatttcaactttttgtatattatccacaacttctaatgttagaaagtcaaaaatgtcaaa 386  Q
    ||||||||||||||| |||| |||||| || ||| ||||||| | |||||  |||||||||| |||||||    
T  43904929 tatacatgatcatttgaactctttgtagataatcaacaacttatgatgtttaaaagtcaaaagtgtcaaa 43904998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 12124564 - 12124608
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctca 72  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||    
T  12124564 taaggacaatgcataatatatgcaaggtccggggttcgaacctca 12124608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 21558848 - 21558812
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  21558848 taaggacaatgcataatatatgcaaggtccgaggttc 21558812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 25978336 - 25978383
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctcagac 75  Q
    |||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  25978336 taaggacaatgcataatatatgcaaggtccgaggttcgaatcccagac 25978383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 29568605 - 29568644
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29568605 taaggacaatgcataatatatgtaaggtccgaggttcgaa 29568644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 42316862 - 42316825
Alignment:
Q  32 gacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42316862 gacagtgcataatatatgcaaggtccgaggttcgaatc 42316825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 19908711 - 19908750
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  19908711 taaggacaatgcataatatatgcaaggtccgaggttcgaa 19908750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 1701637 - 1701675
Alignment:
Q  37 tgcataatatatgtaaggtccgaggttcgaatctcagac 75  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  1701637 tgcataatatatgcaaggtccgaggttcgaacctcagac 1701675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 23160062 - 23160095
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttc 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  23160062 ggacaatgcataatatatgtaaggtccgaggttc 23160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 17320211 - 17320179
Alignment:
Q  37 tgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||||||||||||||||| ||||||||||    
T  17320211 tgcataatatatgtaaggtccgtggttcgaatc 17320179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 36479013 - 36479049
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  36479013 ggacaatgcataatatatgtaaggttcgaggttcgaa 36479049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 37254970 - 37255006
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  37254970 ggacaatgcataatatatgtaaggtccggggttcgaa 37255006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 56551634 - 56551598
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  56551634 taaggacaatgcataatatatgcaaggtccgaggttc 56551598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 21557455 - 21557493
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  21557455 ggacaatgcataatatatgtaaggtccgaggttcgaatc 21557493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 9070977 - 9071016
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  9070977 taaggacaatgtataatatatgtaaggtccgaggttcgaa 9071016  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 27750946 - 27750907
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  27750946 taaggacagtgcataatatatgcaaggtccggggttcgaa 27750907  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 15438472 - 15438517
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctcag 73  Q
    |||||||| ||||||||||||| |||||||| |||| |||||||||    
T  15438472 taaggacaatgcataatatatgcaaggtccggggtttgaatctcag 15438517  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 15529776 - 15529821
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctcag 73  Q
    |||||||| ||||||||||||| |||||||| |||| |||||||||    
T  15529776 taaggacaatgcataatatatgcaaggtccggggtttgaatctcag 15529821  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 19778084 - 19778125
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  19778084 taaggacaatgcataatatatgcaaggtccggggttcgaatc 19778125  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 42208511 - 42208475
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  42208511 taaggacaatgcataatatatgcaaggtccgaggttc 42208475  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 39869849 - 39869806
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatctc 71  Q
    |||||||| ||||||||||||  |||||||||||||||||||||    
T  39869849 taaggacaatgcataatatatacaaggtccgaggttcgaatctc 39869806  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8747274 - 8747238
Alignment:
Q  32 gacagtgcataatatatgtaaggtccgaggttcgaat 68  Q
    |||| |||||||||||||||||||||| |||||||||    
T  8747274 gacaatgcataatatatgtaaggtccggggttcgaat 8747238  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15507304 - 15507272
Alignment:
Q  37 tgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||||||||||||||| ||||||||||||    
T  15507304 tgcataatatatgtaaggtctgaggttcgaatc 15507272  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 53633659 - 53633619
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaat 68  Q
    |||||| | |||||||||||||||||||||| |||||||||    
T  53633659 taaggataatgcataatatatgtaaggtccggggttcgaat 53633619  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 16170 - 16211
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||| |||||||||||||||| || |||||||||||||    
T  16170 taaggacaatgcataatatatgtaaagttcgaggttcgaatc 16211  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 53819 - 53778
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||||||||||||| ||| |||||||| ||||||||||    
T  53819 taaggacagtgcataatacatgcaaggtccggggttcgaatc 53778  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 75344 - 75385
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  75344 taaggacaatgcataatatatgcaaggtccggggttcgaatc 75385  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 10778863 - 10778900
Alignment:
Q  32 gacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  10778863 gacaatgcataatatatgtaaggtctgaggttcgaatc 10778900  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 1794990 - 1794958
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggtt 63  Q
    ||||| |||||||||||||||||||||||||||    
T  1794990 ggacaatgcataatatatgtaaggtccgaggtt 1794958  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 31971548 - 31971584
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttc 64  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  31971548 taaggacaatgcataatatatgcaaggtccgaggttc 31971584  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 34702509 - 34702550
Alignment:
Q  28 taaggacagtgcataatatatgtaaggtccgaggttcgaatc 69  Q
    |||||||| ||||||||||||| |||||||| ||||||||||    
T  34702509 taaggacaatgcataatatatgaaaggtccggggttcgaatc 34702550  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 8882437 - 8882405
Alignment:
Q  32 gacagtgcataatatatgtaaggtccgaggttc 64  Q
    ||||||||||||||||||||||||||| |||||    
T  8882437 gacagtgcataatatatgtaaggtccggggttc 8882405  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 26409275 - 26409311
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  26409275 ggacaatgcataatatatgtaaggtccggggttcgaa 26409311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 26655486 - 26655522
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  26655486 ggacaatgcataatatatgtaaggtccggggttcgaa 26655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 26927071 - 26927107
Alignment:
Q  31 ggacagtgcataatatatgtaaggtccgaggttcgaa 67  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  26927071 ggacaatgcataatatatgtaaggtccggggttcgaa 26927107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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