View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_high_9 (Length: 456)
Name: NF14438_high_9
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Complemental strand, 16705266 - 16704857
Alignment:
| Q |
19 |
caataaatttatctttaacaaaatcaacatgctgatccaaaagtaaggccactaaatccttcattttaggtccatcaacaaaaaa-tatttgtattaaat |
117 |
Q |
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| T |
16705266 |
caataaatttatctttaacaaaatcacc----tgatccaaaggtaaggccattaaatcctttattttaggtccatcaataaaaaaatatttgtattaaat |
16705171 |
T |
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| Q |
118 |
tttgcaagcaaaaagacctcgtatattcaatcttgttttagtccaacttactattataaattataaattatgatatttgtgaacaaacatactcttgaac |
217 |
Q |
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| T |
16705170 |
tttgcaagcaaaaagacctc--atattcaatcttgttttagtccaacttactattataaattat-------gatatttgtgaacaaacatactcttgaac |
16705080 |
T |
|
| Q |
218 |
ttgatccctttagctttctctgaataatgcaacgccgaagtagaagtgtagaacacccggtaactgtttgagtaatattagtaaggtaaggccttcactt |
317 |
Q |
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| T |
16705079 |
ttgatccctttagctttctctgaataatgcaacgccgaagtagaagtgtagaacacccggtaactgtttgagtaatattagtaaggtaaggccttcactt |
16704980 |
T |
|
| Q |
318 |
attgcaaatcaaaagagaccaaaaggatcatgctaattgaacaaagcctaagatttaccttggagacaagcacaaaccgagaagaataaatatacgaagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16704979 |
attgcaaatcaaaagagaccaaaaggatcatgctaattgaacaaagcctaagatttaccttggagacaagcacaaaccgagaagaataaatatacgaagt |
16704880 |
T |
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| Q |
418 |
tattcacaccactcaaacaaatt |
440 |
Q |
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| T |
16704879 |
tattcacaccactcaaacaaatt |
16704857 |
T |
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