View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14438_low_11 (Length: 435)
Name: NF14438_low_11
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_11 |
 | |
|
| [»] scaffold0726 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 63 - 218
Target Start/End: Original strand, 24994840 - 24994995
Alignment:
| Q |
63 |
tttccgctcttctattctattattttcttaatctgcagatctaaagattaggttatttttaaggattgtttttgctcttagattttaaaatcagannnnn |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24994840 |
tttccgctcttctattctattattttcttaatctgcagatctaaagattaggttatttttaaggattgtttttgctcttagatttaaaaatcagattttt |
24994939 |
T |
|
| Q |
163 |
nnnaatcctcttcctctgttattttattttcttgatttcgggtaataaatattaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24994940 |
tttaatcctcttcctctgttattttattttcttgatttgcggtaataaatattaga |
24994995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 24754546 - 24754393
Alignment:
| Q |
67 |
cgctcttctattctattattttcttaatctgcagatctaaagattaggtt---atttttaaggattgtttttgctcttagattttaaaatcaga-nnnnn |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| ||||| ||| |
|
|
| T |
24754546 |
cgctcttctattctattatattcttaatctgcagatctaaagatttttttttcttttttcgctattgttttcgctcttagatttaaaaattagattgttt |
24754447 |
T |
|
| Q |
163 |
nnnaatcctcttcctctgttattttattttcttgatttcgggtaataaatatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24754446 |
tttaatcctcttcctctgttattttattttcttgatttgcagtaataaatatta |
24754393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 24763543 - 24763390
Alignment:
| Q |
67 |
cgctcttctattctattattttcttaatctgcagatctaaagattaggtt---atttttaaggattgtttttgctcttagattttaaaatcaga-nnnnn |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||| |||||||||||| ||||| ||| |
|
|
| T |
24763543 |
cgctcttctattctattatattcttaatctgcagatctaaagatttttttttcttttttcgctattgttttcgctcttagatttaaaaattagattgttt |
24763444 |
T |
|
| Q |
163 |
nnnaatcctcttcctctgttattttattttcttgatttcgggtaataaatatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24763443 |
tttaatcctcttcctctgttattttattttcttgatttgcagtaataaatatta |
24763390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 24758082 - 24758032
Alignment:
| Q |
166 |
aatcctcttcctctgttattttattttcttgatttcgggtaataaatatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24758082 |
aatcctcttcctctgttattttattttcttgatttgcagtaataaatatta |
24758032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 24767079 - 24767029
Alignment:
| Q |
166 |
aatcctcttcctctgttattttattttcttgatttcgggtaataaatatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24767079 |
aatcctcttcctctgttattttattttcttgatttgcagtaataaatatta |
24767029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 6622 - 6464
Alignment:
| Q |
62 |
gtttccgctcttctattctattattttcttaatctgcagatctaaagattaggttatttttaaggattgtttttgctcttagattttaaaatcaga--nn |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6622 |
gtttccgctcttctattctattattttcttaatctgcagaactaaagattaggttatttttaaggattgtttttgctcttagatttaaaaatcagatttt |
6523 |
T |
|
| Q |
160 |
nnnnnnaatcctcttcctctgttattttattttcttgatttcgggtaataaatattaga |
218 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
6522 |
ttttttaatcctcttcctctattattttatgttcttgatttgcggtaataaatattaga |
6464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University