View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14438_low_12 (Length: 428)
Name: NF14438_low_12
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 29341493 - 29341907
Alignment:
| Q |
1 |
gtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29341493 |
gtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaat |
29341592 |
T |
|
| Q |
101 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
29341593 |
atattgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcaaaaaaaggggtttaataggactcga |
29341692 |
T |
|
| Q |
201 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29341693 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
29341792 |
T |
|
| Q |
301 |
gtttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29341793 |
gtttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattg |
29341892 |
T |
|
| Q |
401 |
aaatgcttgacacct |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29341893 |
aaatgcttgacacct |
29341907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 29357520 - 29357934
Alignment:
| Q |
1 |
gtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29357520 |
gtaactatttcaggtcataagtttttgggatgcccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaat |
29357619 |
T |
|
| Q |
101 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29357620 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatctttctttggtatgctctcaaaaaaaggggtttaataggactcga |
29357719 |
T |
|
| Q |
201 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357720 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
29357819 |
T |
|
| Q |
301 |
gtttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357820 |
gtttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattg |
29357919 |
T |
|
| Q |
401 |
aaatgcttgacacct |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29357920 |
aaatgcttgacacct |
29357934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 44660290 - 44659884
Alignment:
| Q |
1 |
gtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaat |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
44660290 |
gtaacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgaca |
44660191 |
T |
|
| Q |
101 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
44660190 |
tcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttga |
44660091 |
T |
|
| Q |
201 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
300 |
Q |
| |
|
||||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
44660090 |
aaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagtt |
44659991 |
T |
|
| Q |
301 |
gtttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattg |
400 |
Q |
| |
|
|| |||||||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
44659990 |
gtgtttgagagacccctggatgatcactttactcgtagatggaatttggcaagcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttg |
44659891 |
T |
|
| Q |
401 |
aaatgct |
407 |
Q |
| |
|
||||||| |
|
|
| T |
44659890 |
aaatgct |
44659884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 44683435 - 44683053
Alignment:
| Q |
1 |
gtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| || | ||| |||||||||| |||| |
|
|
| T |
44683435 |
gtaactatttcaggtcacaagtttttgggatgcccatctccttgcggtgttgtgataactcgtttgaaatacatgagtgcgatatctagagatgttggca |
44683336 |
T |
|
| Q |
101 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
44683335 |
tcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttga |
44683236 |
T |
|
| Q |
201 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
300 |
Q |
| |
|
||||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
44683235 |
aaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagtt |
44683136 |
T |
|
| Q |
301 |
gtttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgtt |
383 |
Q |
| |
|
|| |||||||| ||| | |||||| |||| |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
44683135 |
gtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgtt |
44683053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 44640449 - 44640141
Alignment:
| Q |
2 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaata |
101 |
Q |
| |
|
||||||| || || ||||||||| ||||||| ||| ||||||||||||||| |||||||||| || ||||||| | ||| || ||| |||||| |
|
|
| T |
44640449 |
taactatctctggccataagtttctgggatgtccaattccttgtggtgttttattaactcgtttagaacatatcaacactttatgtaaagatgttgaagt |
44640350 |
T |
|
| Q |
102 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
201 |
Q |
| |
|
|||| ||| |||||| | ||||| | ||||| || ||||| |||||||||||||| |||||||||||| | | ||| | ||||||||| | |
|
|
| T |
44640349 |
gattggttctagggataccacaattagtggtagtcgaagtggtcatgctccaatctttctttggtatgctttgcaaaaaagaggtatcataggactccaa |
44640250 |
T |
|
| Q |
202 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
301 |
Q |
| |
|
|||||||| ||| ||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| ||||| |
|
|
| T |
44640249 |
aatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttg |
44640150 |
T |
|
| Q |
302 |
tttttgaga |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
44640149 |
tttttgaga |
44640141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 44668762 - 44668454
Alignment:
| Q |
2 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaata |
101 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||| || ||||||| | ||| || ||| |||||| |
|
|
| T |
44668762 |
taaccatttcaggccataagtttttgggatgtccaattccttgtggtgttttattaactcgtttagaacatatcaacactttatgtaaagatgttgaagt |
44668663 |
T |
|
| Q |
102 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
201 |
Q |
| |
|
|||| ||| |||||| | ||||| | ||||| || ||||| |||||| ||||||| ||||||||||| | ||||||| |||| || ||| |
|
|
| T |
44668662 |
gattggttctagggataccacaattagtggtagtcgaagtggacatgcttcaatctttatttggtatgctttgcaaaaaaagggtttattagggcttgag |
44668563 |
T |
|
| Q |
202 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
301 |
Q |
| |
|
|||||||| ||| | ||||||| ||||||| ||||| || || |||| || |||||||| ||| | ||||||| || || | |||||| | ||||| |
|
|
| T |
44668562 |
aatgaagtgcataagtgcataatgaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttg |
44668463 |
T |
|
| Q |
302 |
tttttgaga |
310 |
Q |
| |
|
||||||||| |
|
|
| T |
44668462 |
tttttgaga |
44668454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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