View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_17 (Length: 401)
Name: NF14438_low_17
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 1555330 - 1555682
Alignment:
| Q |
1 |
tcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaaccttnnnnnnn-tgacaatataa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1555330 |
tcagtttgcatattcaaacactgctatacaagctaaagcttactaaccctgaatcttgttataacttataaataaaaccttaaaaaaaatgacaatataa |
1555429 |
T |
|
| Q |
100 |
tatgtgctgcacaaagcatggctggaaagacaactcgagggtattgcagatgttggaaagatgatcattgctggaaagacaactcagcaagatggtaaga |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1555430 |
tatgtgctgcacaaagcaaggctggaaagacaactccagggtattgcagatgttggaaagatgatcattactggaaagacaactcagcaagatggtaaga |
1555529 |
T |
|
| Q |
200 |
atgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaagcaatatcaatttacgcaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555530 |
atgacaactagtttggatgttctataaccaaggaagaaaaagatttgtttgaatgatcatcagcaaaaatattttggcaagcaatatcaatttacgcaca |
1555629 |
T |
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| Q |
300 |
aaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatatatca |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1555630 |
aaaagaactaaaacttctttaaattgaccaagaacaatatttcaaatatatca |
1555682 |
T |
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