View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_19 (Length: 380)
Name: NF14438_low_19
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_19 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 115 - 369
Target Start/End: Original strand, 31034352 - 31034606
Alignment:
| Q |
115 |
aacaactttgcatacacaacgagtagacacatattgggattaatacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaa |
214 |
Q |
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| T |
31034352 |
aacaactttgcatgcacaacgagtagacacatattgggattaatacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaa |
31034451 |
T |
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| Q |
215 |
atcacataagttaaaaattgatgctatatgttgtagctcacaatcttacacacaccaacttatcaggtactaatccttgtatcaaaatcatttcaatgtg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31034452 |
atcacataagttaaaaattgatgctatatgttgtagctcacaatcttacacacaccatcttatcaggtactaatccttgtatcaaaatcatttcaatgtg |
31034551 |
T |
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| Q |
315 |
atttggaagaagagcaaagttgaagctcctaaatgattaatgtaagcttattctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31034552 |
atttggaagaagagcaaagttgaagctcctaaatgattaatgtaagcttattctt |
31034606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 30595 - 30478
Alignment:
| Q |
16 |
agcaaaaactgccactttttacggaacaaaaccacgacatacatcctgattcatgagtaatgaaatttatcttaatataagacaaaaccagtatgttata |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||| |||||||||||||||||||| |
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| T |
30595 |
agcaaaaactgccactttttatggaacaaaaccacgacatacatcttgattcctgagtaaagaaatttagcttaatataggacaaaaccagtatgttata |
30496 |
T |
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| Q |
116 |
acaactttgcatacacaa |
133 |
Q |
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| T |
30495 |
acaactttgcatgcacaa |
30478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 30673 - 30617
Alignment:
| Q |
18 |
caaaaactgccactttttacggaacaaaaccacgacatacatcctgattcatgagta |
74 |
Q |
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| T |
30673 |
caaaaactgccactttttacggaacaaaatcacgacatacatcctgattcctgagta |
30617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 38824544 - 38824503
Alignment:
| Q |
328 |
gcaaagttgaagctcctaaatgattaatgtaagcttattctt |
369 |
Q |
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| T |
38824544 |
gcaaagttgaagctctaaaatgattaatgtaagcttattctt |
38824503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 30366542 - 30366501
Alignment:
| Q |
328 |
gcaaagttgaagctcctaaatgattaatgtaagcttattctt |
369 |
Q |
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| T |
30366542 |
gcaaagttgaagctctgaaatgattaatgtaagcttattctt |
30366501 |
T |
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