View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_2 (Length: 610)
Name: NF14438_low_2
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 9385100 - 9384501
Alignment:
| Q |
1 |
tctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactacnnnnnnnn |
100 |
Q |
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| T |
9385100 |
tctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactactttttttt |
9385001 |
T |
|
| Q |
101 |
nctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaagaacaaaaatgatg |
200 |
Q |
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| T |
9385000 |
tctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaagaacaaaaatgagg |
9384901 |
T |
|
| Q |
201 |
ttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgatcattctaatagtgaaggtcaaagggcattgagattgttagagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9384900 |
ttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgatcattctaatagtgaaggtcaaagggcattgagattgttagagac |
9384801 |
T |
|
| Q |
301 |
attgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttagctcattag |
400 |
Q |
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| T |
9384800 |
attgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttaactcattag |
9384701 |
T |
|
| Q |
401 |
gctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaatgagagcttcatgttttag |
500 |
Q |
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| T |
9384700 |
gctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaacgagagcttcatgttttag |
9384601 |
T |
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| Q |
501 |
aattatattattggacctttgatgcaatactttgtgaccattgatgttttagatttatattattggtcattnnnnnnngaattatattattggacctttg |
600 |
Q |
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| T |
9384600 |
aattatattattggacctttgatgcaatactttgtgaccattgatgttttagaattatattattggtcattacaaaaagaattatattattggacctttg |
9384501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 31948185 - 31947700
Alignment:
| Q |
1 |
tctttgtgatcaagatcaacaactagcatttttggttagagttttaagagaagtgaacacaatcactatatctatattaagttctgtactacnnnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
31948185 |
tctttgtgatcaagatcaacaactagcatttttggttagggttttaagagaagtaaacacaatcactatatctatattaagttttgtgctactttttttg |
31948086 |
T |
|
| Q |
101 |
nctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaagaagggaagaacaaaaatgatg |
200 |
Q |
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| T |
31948085 |
tctatgccagcacttggaacaaaagggtcatctttgatttcgaagttgaagcctatggtgtttttctcttatgagaaaga-gggaagaacaaaaatgagg |
31947987 |
T |
|
| Q |
201 |
ttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgatcattctaatagtgaaggtcaaagggcattgagattgttagagac |
300 |
Q |
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| T |
31947986 |
ttgaggatctaaacaatgctttgtgttctcttattggaaaagataaaaatagtgattattctaatagtgaaggtcaaagggcattaagattgtcagagac |
31947887 |
T |
|
| Q |
301 |
attgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagtgttgtgtttgaatatgttagctcattag |
400 |
Q |
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| T |
31947886 |
attgaatgttaatgttgatagtttagaaggtagattagattgcatatttagctgtttggtaaaaaatagagtgttgtgtttaaatatgttagctcattag |
31947787 |
T |
|
| Q |
401 |
gctaacataggtggagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtgaaaatcaatccatgtttgaatgagag |
487 |
Q |
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| T |
31947786 |
gctaacataggtagagtaaaaattaatgtccttttgtaaatgagagaatgatcttgtagtaaaattcaatccatgtttgaatgagag |
31947700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 31947683 - 31947642
Alignment:
| Q |
530 |
ctttgtgaccattgatgttttagatttatattattggtcatt |
571 |
Q |
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| T |
31947683 |
ctttgtgaccattgatgtcttagaattatattattggtcatt |
31947642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 31455574 - 31455655
Alignment:
| Q |
291 |
tgttagagacattgaatgttaatgttgatagtttagaaggtggattagattgcatatttagatgtttggtaaaaaatagagt |
372 |
Q |
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|||||||||||||||||||||||||| | | | ||||||||||| |||||||| | ||||||||| ||| ||||||||| |
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| T |
31455574 |
tgttagagacattgaatgttaatgtttgtggacttgaaggtggattggattgcatttatagatgtttagtacgaaatagagt |
31455655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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