View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_20 (Length: 376)
Name: NF14438_low_20
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 39367254 - 39366970
Alignment:
| Q |
1 |
cttgtattgcttgcttctcagccttacaaaccaaaaactgctttgccttggtgcgtacgtttactacttggcgttgtgatgaaaacctagtacttgtagt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367254 |
cttgtattgcttgcttcttagccttacaaaccaaaaactgctttgccttgctgcgtacgtttactacttggcgttgtgatgaaaacctagtacttgtagt |
39367155 |
T |
|
| Q |
101 |
aggggtagaaagtgcaaggtgggacaagaaacattgagttgaagaagccattgaatttgagcagctagctaactatacctctcactctccttgtttgttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367154 |
aggggtagaaagtgcaaggtgggacaagaaacattgagttgaagaagccattgaatttgagcagctagctaactatacctctcactctccttgtttgttc |
39367055 |
T |
|
| Q |
201 |
tgttaatcaaaactctatggtagctagcaattaatttaaggtaagttttggagagttggaatttagtagtttagaatgttcgagt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367054 |
tgttaatcaaaactctatggtagctagcaattaatttaaggtaagttttggagagttggaatttagtagtttagaatgttcgagt |
39366970 |
T |
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