View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_22 (Length: 365)
Name: NF14438_low_22
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 28916105 - 28916443
Alignment:
| Q |
12 |
cataatgtttcatttcactcaaacacaaaatccatggt---agaatcaaacaactaccgaacttcatgctatggatccgaattttgtaggattcgaaacc |
108 |
Q |
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| T |
28916105 |
cataatgtttcatttcactcaaacacaaaaaccattgttgtagaatcaaacaactaccgaacttcatgctatggatccgaattttgttgatttcgaaacc |
28916204 |
T |
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| Q |
109 |
acctacaaattcgatgaccaaggtaacctaatccttctctccgatccatatccaaatccaaaccttaacgatttcaccatcaccaacccttacgtgggcc |
208 |
Q |
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| T |
28916205 |
acctacaaattcgatgaccaaggtaacctaatccttctctctgatccagatccaaatccaaaccttaacgatttcaccatcaccaacccttacgtgggcc |
28916304 |
T |
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| Q |
209 |
agcccatttcggagccacccgttttttcttctgatgcaaccaaagattctacatttgaagatgctgatttttcagaaacattgaaatatatatataagcc |
308 |
Q |
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| T |
28916305 |
aacccatttcgaagccatccgttttttcttctaatgcaaccaaagattctacatttgaagatgctgatctttcagaaacattgaa----atatataagcc |
28916400 |
T |
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| Q |
309 |
agattctaatggaagaagattttgaacaaataccatgtatgtg |
351 |
Q |
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| T |
28916401 |
agattctaatgttagaagattttgaacaaataccatgtatgtg |
28916443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 41596521 - 41596849
Alignment:
| Q |
13 |
ataatgtttcatttcactcaaacacaaaatccatggtagaatcaaacaactaccgaacttcatgctatggatccgaattttgtaggattcgaaaccacct |
112 |
Q |
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| T |
41596521 |
ataatgtttcatttcacttgaacacaaaaaccatcgtagaatcaaacaactaaccaacttcatgctatggatccgaattttgtcggattcgaaacaacct |
41596620 |
T |
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| Q |
113 |
acaaattcgatgaccaaggtaacctaatccttctctccgatccatatccaaatccaaaccttaacgatttcaccatcaccaacccttacgtgggccagcc |
212 |
Q |
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| T |
41596621 |
acaaattcgatgaccatggtaacttaatccttctctctgatcc------aaatccaaaccttgacgatttcaccatcaccaacccttatgtgggcccatc |
41596714 |
T |
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| Q |
213 |
catttcggagccacccgttttttcttctgatgcaaccaaagattctacatttgaagatgctgatttttcagaaacattgaaatatatatataagccagat |
312 |
Q |
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| T |
41596715 |
caattcggagccactagttttttcttctgatacaaccaaagattctacctttgaagatgctgatttttcagaaacagtgaa----atatataagccagat |
41596810 |
T |
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| Q |
313 |
tctaatggaagaagattttgaacaaataccatgtatgtg |
351 |
Q |
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| T |
41596811 |
tttaatggaagaagaatttgaacaaaaaccatgtatgtg |
41596849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 27325941 - 27326116
Alignment:
| Q |
172 |
cttaacgatttcaccatcaccaacccttacgtgggccagcccatttcggagccacccgttttttcttctgatgcaaccaaagattctacatttgaagatg |
271 |
Q |
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||||| |||||||| ||||||||| |||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
27325941 |
cttaaagatttcactatcaccaactcttatgtgggcccatccaatttggagccactcgttttttcttctgatgcaaccaaagattctacctttaaagatg |
27326040 |
T |
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| Q |
272 |
ctgatttttcagaaacattgaaatatatatataagccagattctaatggaagaagattttgaacaaataccatgtatgtg |
351 |
Q |
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| T |
27326041 |
ctaatttttcagaagcagtgaa----atatataagccatattttgatggaaaaagattttgaacaaaaaccatgtatgtg |
27326116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 27324910 - 27324991
Alignment:
| Q |
75 |
tgctatggatccgaattttgtaggattcgaaaccacctacaaattcgatgaccaaggtaacctaatccttctctccgatcca |
156 |
Q |
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|||||||||||| |||||||| ||||||||||| |||| ||||||||||||||| | |||||||||| ||||||| |||||| |
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| T |
27324910 |
tgctatggatccaaattttgttggattcgaaacaacctgcaaattcgatgaccatgttaacctaatctttctctctgatcca |
27324991 |
T |
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