View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_23 (Length: 365)
Name: NF14438_low_23
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 14527626 - 14527273
Alignment:
| Q |
1 |
tcaatgcatgaacctacatcctagcataattttgtccactaaaaagtgccgagaactacaatttatttacctcctgaactcccattttcaacttccttgt |
100 |
Q |
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| T |
14527626 |
tcaatgcatgaagctacatcctagcataattttgtccactaaaaagtgccgagaactacaatttatttacctcctgaactcccattttcaacttccttgt |
14527527 |
T |
|
| Q |
101 |
taagaaagtcagtgttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgatgcatgctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14527526 |
taagaaagtcagtgttggagtacctcatgaagcatccggtgttgagcgcccgtccttctgacgagggcagacatctcaaaatagaagatgacgcatgctc |
14527427 |
T |
|
| Q |
201 |
gagacatgctttgcaagacttagaatccaaacttctctaacaatcagccagaacataagcagattcattcgatgttcctgatacaactactttccctctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527426 |
gagacatgctttgcaagacttagaatccaaacttctccaacaatcagccagaacataagcagattcattcgatgttcctgatacaactactttccctctg |
14527327 |
T |
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| Q |
301 |
gcatagcctttatttttcggtgcatctcgaaccgctc-ttaacactgcctcctt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14527326 |
gcatagcctttatttttcggtgcatctcgaaccgctctttaacactgcctcctt |
14527273 |
T |
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