View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_27 (Length: 333)
Name: NF14438_low_27
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 37928031 - 37927735
Alignment:
| Q |
21 |
tcatccaagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattcttctattcctttgtctagtgctggtgaaatttctt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37928031 |
tcatccaagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattcttctattgctttgtctagtgctggtgaaatttctt |
37927932 |
T |
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| Q |
121 |
cgcctctgccaagtctataatctataaatgtttcaatattttttctacgcaattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctct |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37927931 |
cgcctctgccaagtctataatctataaatgtttcaatattttttccatgcaattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctct |
37927832 |
T |
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| Q |
221 |
gaagctgaggaacacatcatgtgttgtagttgttggacgagatattagcaatagcagaaattttcttacacccaacaatggaagggaccaaatttct |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37927831 |
gaagctgaggaacacatcatgttttgtagttgttggacgagatattagcaatagcagaaattttcttacacccaacaatggaagggaccaaatttct |
37927735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 37959457 - 37959527
Alignment:
| Q |
170 |
caattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctctgaagctgaggaacacatcat |
240 |
Q |
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||||||| |||||||||||| ||||||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
37959457 |
caattctttataaagatgactggtgaagtagtgacgagtgtcctctcctctaaagctgaggaacacatcat |
37959527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 37959329 - 37959406
Alignment:
| Q |
21 |
tcatccaagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattcttctattcctttg |
98 |
Q |
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|||||||||||||| | |||||||||||| | || ||||||||||| |||||||| | ||||||||| ||| ||||| |
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| T |
37959329 |
tcatccaagcaccaagaggaagaagcatagtgtttggacaaaatgacaacataaatggatgattcttcaattgctttg |
37959406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 44645445 - 44645515
Alignment:
| Q |
170 |
caattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctctgaagctgaggaacacatcat |
240 |
Q |
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| T |
44645445 |
caattcagcatatagatgagtgatgaagttgtcacgtgtgtcctcccctctatagctgaggaacacatcat |
44645515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 25720465 - 25720251
Alignment:
| Q |
21 |
tcatccaagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattcttctattcctttgtctagtgctggtgaaatttctt |
120 |
Q |
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||||||| |||||||||||||||||||| | || || ||||||| || ||||| |||||| ||||||| || ||| ||||| |||||||| |||| |
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| T |
25720465 |
tcatccatacaccatgtggaagaagcataatgctcggataaaatgatgacgtaaatcattgattgttctatttctctgtacagtgccggtgaaatctctt |
25720366 |
T |
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| Q |
121 |
cgcctctgccaagtctataatctataaatgtttcaatattttttctacgcaattctgcataaagatgacttgtgaagttgtcacgagtatcctctcctct |
220 |
Q |
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|||||| | | || |||||||| || |||| |||||||| || | ||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
25720365 |
tccctctgtctaacctgtaatctatgaaggttttgatatttttcctgcataattctgcagaaagatgactaatgaagttgtcacgagtatcctctcctct |
25720266 |
T |
|
| Q |
221 |
gaagctgaggaacac |
235 |
Q |
| |
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||| ||||| ||||| |
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| T |
25720265 |
gaaactgagaaacac |
25720251 |
T |
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