View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14438_low_28 (Length: 322)
Name: NF14438_low_28
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 39280385 - 39280266
Alignment:
| Q |
143 |
ctattttaacagattattatagtaaaaaatttacattatccaccaatcaatcacaacgataaatatgtagttgcatgattttttgacataaggtgtgtgt |
242 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280385 |
ctattttgacagatcattatagtaaaaagtttacattatccaccaatcaatcacagcgataaatatgtagttgcatgattttttgacataaggtgtgtgt |
39280286 |
T |
|
| Q |
243 |
ctaacaaaaggagttaagct |
262 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39280285 |
ctaacaaaaggagttaagct |
39280266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 39280219 - 39280165
Alignment:
| Q |
260 |
gctttttattagatttatcgcttaatatgtgtatgtagtataggtaggctagagc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280219 |
gctttttattagatttatcgcttaatatgtgtatgtagtataggtaggctagagc |
39280165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 39283056 - 39282941
Alignment:
| Q |
41 |
aaattttaattctccaacgaatagtttgatttaatttgtattttagt-------aatnnnnnnnnntcttaaaagttgtgactacacctgatgttaaagg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
39283056 |
aaattttaattctccaacgaatagtttgatttaatttgtattttagtaaaaaaaaaaaaaaaatcttcttaaaagttgtgactacacctgatgttaaagg |
39282957 |
T |
|
| Q |
134 |
atttcgactctatttt |
149 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
39282956 |
atcccgactctatttt |
39282941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University