View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_34 (Length: 286)
Name: NF14438_low_34
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 26181033 - 26180774
Alignment:
| Q |
1 |
tgggagtctatcattccagaaattatacctctaacattctcgagcttcaacatagagcttatacggatccagtagtctacacggaaagcttgatatcacc |
100 |
Q |
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| T |
26181033 |
tgggagtctatcattccagaaattatacctctaacattctcgagcttcaacatagagcttatacggatccagtagtctacatggaaagcttgatatcacc |
26180934 |
T |
|
| Q |
101 |
ttgttcgttggccatagtgaatcaatgatggtatatttgttgaaaatgaatagttgacagtgcatctcttatgcttaaataaacacatacattgcttgta |
200 |
Q |
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| T |
26180933 |
ttgttcgttggccatagtgaat-----------tatttgttgaaaatgaatagttgacagtgcatctcttatgcttaaataaacacatacattgcttgta |
26180845 |
T |
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| Q |
201 |
ttttgatgttaaaataacagctcatatttataggtgtccttgtcaattgaagtttcaagtcaacgtctgtg |
271 |
Q |
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| T |
26180844 |
ttttgatgttaaaataacagctcatatttataggcgtccttgtcaattgaagtttcaagtcaatgtctgtg |
26180774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 1189976 - 1189885
Alignment:
| Q |
179 |
ataaacacatacattgcttgtattttgatgttaaaataac--agctcatatttataggtgtccttgtcaattgaagtttcaagtcaacgtct |
268 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
1189976 |
ataaacacatacattgcatgtattttgatgttaaaataacatacctcatatttataggggtcctggtcaattgaagtttcaagttaacgtct |
1189885 |
T |
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