View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_35 (Length: 286)
Name: NF14438_low_35
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 23470686 - 23470422
Alignment:
| Q |
1 |
gaagagatcaacctcttaaatgaatcttagttctctcatgatgattaatatttacagttcgacgcagatgatgtttttgttaaccaaaacgaattaaaat |
100 |
Q |
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|||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
23470686 |
gaagaggtcaacctcttaaatgaatcttaattttctcatgatgattaatatttacggttccacgcagatgatgtttttgttaaccaaaaagaattaaaat |
23470587 |
T |
|
| Q |
101 |
ctgcatgtagccatcc-----aaaagaaaattttcatatgttgttttctgttcctttccttaatttaacacatatacaagtaacaaattgtatacctgaa |
195 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23470586 |
ctgcatgtagccatccaaattaaaagaaaaatttcatatgttgttttctgttcctttccttaatttaacacatatacaagtaacaaattgtgtacctgaa |
23470487 |
T |
|
| Q |
196 |
attgacatttctctatacacacacataaatatgtgactgaacaaaagatgagtgatgcatgtacttt |
262 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23470486 |
attgacatttctctat--acacacataaatatgtgactgaacaaaagatgagagatgcatgtacttt |
23470422 |
T |
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