View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_40 (Length: 265)
Name: NF14438_low_40
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_40 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 438584 - 438354
Alignment:
| Q |
21 |
gctcccgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttaggattc |
120 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
438584 |
gctcctgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactatacaaaagcttagacttgatgcagagcttaggattc |
438485 |
T |
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| Q |
121 |
tagcatgtgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggccttta |
220 |
Q |
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| T |
438484 |
tagcatgtgttcacaatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggccttta |
438385 |
T |
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| Q |
221 |
ccttgttgaaatcgttggacgtgttggtgcc |
251 |
Q |
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| T |
438384 |
ccttgttgaaatcgttggacgtgttggtgcc |
438354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 28608320 - 28608549
Alignment:
| Q |
21 |
gctcccgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttaggattc |
120 |
Q |
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|||||| |||| |||| |||||||||||||| |||||||| |||| | || |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28608320 |
gctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattc |
28608419 |
T |
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| Q |
121 |
tagcatgtgttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggccttta |
220 |
Q |
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| T |
28608420 |
tagcatgtgttcataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcacttta |
28608519 |
T |
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| Q |
221 |
ccttgttgaaatcgttggacgtgttggtgc |
250 |
Q |
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| T |
28608520 |
ccttgttgaactcgttggacgtgatggtgc |
28608549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 13659700 - 13659900
Alignment:
| Q |
30 |
atcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttaggattctagcatgtg |
129 |
Q |
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||||||| |||||| ||||| ||||||||||||||| | || |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
13659700 |
atcaatgtcatatataagccgagaaagagatttgagcagaacaagctaaagactatacaaaagcttagacttgatgcagagcttaggattcttacatgtg |
13659799 |
T |
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| Q |
130 |
ttcacaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttga |
229 |
Q |
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|||| ||| |||| ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| |||| |
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| T |
13659800 |
ttcataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattga |
13659899 |
T |
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| Q |
230 |
a |
230 |
Q |
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| T |
13659900 |
a |
13659900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 13652203 - 13652400
Alignment:
| Q |
33 |
aatgccatatacaagcccagaaagagatttgagaataataagctaaagactgtacaaaagctcagacttgatgcagagcttaggattctagcatgtgttc |
132 |
Q |
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||||| ||||| |||||||| |||||||||||| | || |||||||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
13652203 |
aatgcgatatataagcccaggaagagatttgagcagaacaagctaaagactatacaaaagcttagacttgatgcagaacttaggattctaacatgtgttc |
13652302 |
T |
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| Q |
133 |
acaatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaa |
230 |
Q |
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| T |
13652303 |
acaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaa |
13652400 |
T |
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