View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_41 (Length: 256)
Name: NF14438_low_41
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 12365625 - 12365876
Alignment:
| Q |
6 |
aaattgggctagacaataccaatctatcgaaacttaattatcttatcatatattctcatgttaaaataaagaacaattaacaaacctagtttatccataa |
105 |
Q |
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| T |
12365625 |
aaattgggctagacaataccaatctatcgaaacttaattatcttatcatatattctcatgttaaaataaagaacaattaacaaacctagtttatccataa |
12365724 |
T |
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| Q |
106 |
ttaaa-caattacattttaacgaaaactcgatgaacaaacatatactcgtattttgtaagtccattcgtggcctgtttcaaattaggtccgtacgtatga |
204 |
Q |
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| T |
12365725 |
ttaaaacaattacattttaaccaaaactcgatgaacaaacatatactcgtattttgtaagtccattcgtggcctgtttcaaatcaggtacgtacgtatga |
12365824 |
T |
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| Q |
205 |
aatatgaatctaaaactctaaagtatagacgagcaatatgatgtaattctta |
256 |
Q |
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| T |
12365825 |
aatatgaatctaaaactctaaagtatagacgaacaatatgatgtaattctta |
12365876 |
T |
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