View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_low_5 (Length: 521)

Name: NF14438_low_5
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_low_5
NF14438_low_5
[»] chr1 (4 HSPs)
chr1 (19-516)||(25808949-25809446)
chr1 (271-505)||(25815959-25816193)
chr1 (291-498)||(25797225-25797432)
chr1 (145-189)||(25809361-25809405)
[»] chr4 (5 HSPs)
chr4 (70-178)||(50134993-50135102)
chr4 (77-125)||(48514590-48514637)
chr4 (86-120)||(6924754-6924788)
chr4 (87-124)||(41594681-41594718)
chr4 (76-125)||(54235277-54235325)
[»] chr6 (1 HSPs)
chr6 (67-135)||(9065723-9065791)
[»] chr2 (2 HSPs)
chr2 (76-125)||(10459273-10459321)
chr2 (71-116)||(39713794-39713839)
[»] chr8 (1 HSPs)
chr8 (60-88)||(10107275-10107303)
[»] chr3 (1 HSPs)
chr3 (92-120)||(30443760-30443788)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 25809446 - 25808949
Alignment:
Q  19 tttctaactcttgatcgtttatttggtataataatgcaacatacttcctctggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttgg 118  Q
    |||||||||||||||| ||| || | ||||||||||| |||||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809446 tttctaactcttgatcatttcttcgatataataatgcgacatactctctccagtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttgg 25809347  T
Q  119 tccaaaagttgaattaagta-atctatttttgtcgactcaacttttgtttatgtttgagaccggagagagtagtaagcata-aattagtgctcatctgca 216  Q
    ||||||||||||||||| || |||||||||||| |||| || |||||||||| ||| |||||||||||  ||||||| ||  |||||||||||||||| |    
T  25809346 tccaaaagttgaattaaatacatctatttttgttgacttaatttttgtttatatttaagaccggagag--tagtaagtatctaattagtgctcatctgta 25809249  T
Q  217 cgctagtattagcataatttagttatggtttttctttgtggtgcttatgattgcaggtatttcttactcttgctactgctagtgctgcttcagctgcttc 316  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  25809248 cgctagtattagcataatttagttatggtttttctttatggtgcttatatttgcaggtttttcttactctggctactgctagtgctgcttcagctgcttc 25809149  T
Q  317 catagtttacttggcacataatggaaatcaagacacaaactggctagccatttgcaaccaatttggagatttctgtgcacagacaagtggagcagtagtg 416  Q
     ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25809148 tatagtttacttagcacacaatggaaatcaagacacaaactggctagccatttgcaaccaatttggagatttttgtgcacagacaagtggagcagtagtg 25809049  T
Q  417 gcatcatttattactgtggttgttttaattgtgttggttgtgatgtctgctttggctattgggaagcattgaaaattaagattgaattacctatgctact 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  25809048 gcatcatttattactgtggttgttttaattgtgttggttgtgatgtctgctttggctcttgggaagcattgaaaattaagattgaattacttatgttact 25808949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 271 - 505
Target Start/End: Complemental strand, 25816193 - 25815959
Alignment:
Q  271 aggtatttcttactcttgctactgctagtgctgcttcagctgcttccatagtttacttggcacataatggaaatcaagacacaaactggctagccatttg 370  Q
    |||| ||||||||||| || ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25816193 aggtgtttcttactctggccacttcaagtgctgctgcagctgcttccatagtttacttggcacataatggaaatcaagacacaaactggctagccatttg 25816094  T
Q  371 caaccaatttggagatttctgtgcacagacaagtggagcagtagtggcatcatttattactgtggttgttttaattgtgttggttgtgatgtctgctttg 470  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25816093 caaccaatttggagatttttgtgcacagacaagtggagcagtagtggcatcatttattactgtggttgttttaatcttgttggttgtgatgtctgctttg 25815994  T
Q  471 gctattgggaagcattgaaaattaagattgaatta 505  Q
    |||||||||||||||||||||||||||||| ||||    
T  25815993 gctattgggaagcattgaaaattaagattggatta 25815959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 291 - 498
Target Start/End: Complemental strand, 25797432 - 25797225
Alignment:
Q  291 actgctagtgctgcttcagctgcttccatagtttacttggcacataatggaaatcaagacacaaactggctagccatttgcaaccaatttggagatttct 390  Q
    |||||||||| ||||||||| ||| |||| |||| ||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  25797432 actgctagtggtgcttcagcagctgccatggtttccttggcacacaacggcaatcaagactcaaactggcttgccatttgcaaccaatttggagatttct 25797333  T
Q  391 gtgcacagacaagtggagcagtagtggcatcatttattactgtggttgttttaattgtgttggttgtgatgtctgctttggctattgggaagcattgaaa 490  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  25797332 gtgcacaaacaagtggtgcagttgtggcatcattcattactgtggttgttttaatggtgttggttgtgatgtctgctttggctcttgggaagcattgaaa 25797233  T
Q  491 attaagat 498  Q
    ||||||||    
T  25797232 attaagat 25797225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 25809361 - 25809405
Alignment:
Q  145 ttttgtcgactcaacttttgtttatgtttgagaccggagagagta 189  Q
    |||||| ||| |||||||||||||| |||||||| ||||||||||    
T  25809361 ttttgttgacccaacttttgtttatatttgagactggagagagta 25809405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 50134993 - 50135102
Alignment:
Q  70 ggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaagta-atctatttttgtcgactcaacttttgttta 168  Q
    |||||||||||||| ||||| |||  ||||| |||||| |||||||| |||||||||||||| ||| || ||  |||||||| ||||| |||||||||||    
T  50134993 ggtctcaaatataagcaaaaattgaatcaaccaaagtttatgtatttagtccaaaagttgaaataaatacattcatttttgttgactcgacttttgttta 50135092  T
Q  169 tgtttgagac 178  Q
    | || |||||    
T  50135093 tattcgagac 50135102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 48514637 - 48514590
Alignment:
Q  77 aatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 125  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||    
T  48514637 aatataaacaaaaattag-tcaacaaaagttaatgtatttggtccaaaa 48514590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 6924788 - 6924754
Alignment:
Q  86 aaaagttgggtcaacaaaagttaatgtatttggtc 120  Q
    ||||||| |||||||||||||||||||||||||||    
T  6924788 aaaagttaggtcaacaaaagttaatgtatttggtc 6924754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 41594681 - 41594718
Alignment:
Q  87 aaagttgggtcaacaaaagttaatgtatttggtccaaa 124  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  41594681 aaagttgggtcaacaaaagttgatgtatatggtccaaa 41594718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 54235325 - 54235277
Alignment:
Q  76 aaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 125  Q
    |||||||||||||| |||  |||||||||||||||||||||||| |||||    
T  54235325 aaatataaacaaaaattgc-tcaacaaaagttaatgtatttggttcaaaa 54235277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 9065723 - 9065791
Alignment:
Q  67 tctggtctcaaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaagttgaattaa 135  Q
    ||||||||||||||||||||||||||  |||||||||| || |||||||| ||| |||| || ||||||    
T  9065723 tctggtctcaaatataaacaaaagttaagtcaacaaaaattgatgtatttcgtctaaaatttaaattaa 9065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10459273 - 10459321
Alignment:
Q  76 aaatataaacaaaagttgggtcaacaaaagttaatgtatttggtccaaaa 125  Q
    |||||||| ||||| |||| |||||||||||||||||||||||| |||||    
T  10459273 aaatataagcaaaaattgg-tcaacaaaagttaatgtatttggttcaaaa 10459321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 39713839 - 39713794
Alignment:
Q  71 gtctcaaatataaacaaaagttgggtcaacaaaagttaatgtattt 116  Q
    ||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  39713839 gtctcaaatataagcaaaagttgagtcaacaaaaggtgatgtattt 39713794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 10107275 - 10107303
Alignment:
Q  60 tacttcctctggtctcaaatataaacaaa 88  Q
    |||||||||||||||||||||||||||||    
T  10107275 tacttcctctggtctcaaatataaacaaa 10107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 30443760 - 30443788
Alignment:
Q  92 tgggtcaacaaaagttaatgtatttggtc 120  Q
    |||||||||||||||||||||||||||||    
T  30443760 tgggtcaacaaaagttaatgtatttggtc 30443788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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