View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_50 (Length: 221)
Name: NF14438_low_50
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_50 |
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| [»] chr2 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5830728 - 5830508
Alignment:
| Q |
1 |
ccttttatctgtgtaggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaag |
100 |
Q |
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| T |
5830728 |
ccttttatctgtgtaggttatgtatgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaag |
5830629 |
T |
|
| Q |
101 |
gtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5830628 |
gtgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttc |
5830529 |
T |
|
| Q |
201 |
tatattgcacaaatgctttca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5830528 |
tatattgcacaaatgctttca |
5830508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 5825837 - 5826043
Alignment:
| Q |
14 |
taggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaaggtgatggacatgt |
113 |
Q |
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||||| ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |
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| T |
5825837 |
taggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattttgtgctgaacaaaaggtgatggatatgt |
5825936 |
T |
|
| Q |
114 |
acagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaa |
213 |
Q |
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| T |
5825937 |
accagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcattttttgctctatactgcacaaa |
5826036 |
T |
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| Q |
214 |
tgctttc |
220 |
Q |
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||||||| |
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| T |
5826037 |
tgctttc |
5826043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 5767705 - 5767912
Alignment:
| Q |
2 |
cttttatctgtgtaggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaagg |
101 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
5767705 |
cttttatctatgtaggtgatgtatgaagaggcaagtcaggtggcaaatgatgctgttggtagcataagaactgttgcatcatttaatgcagaatcaaagg |
5767804 |
T |
|
| Q |
102 |
tgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttct |
201 |
Q |
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||||||| |||||| || ||||||| ||| |||| |||||||| |||| | |||||||| |||||| ||||||||| | ||| ||| | | ||| |
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| T |
5767805 |
tgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctcttttgtcgctct |
5767904 |
T |
|
| Q |
202 |
atattgca |
209 |
Q |
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|||||||| |
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| T |
5767905 |
atattgca |
5767912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 5794677 - 5794766
Alignment:
| Q |
26 |
gaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaaggtgatggacatgtac |
115 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||| ||| |||||||||||| |||||| |
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| T |
5794677 |
gaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcatttagtgctgaacaaaaggtgatggatatgtac |
5794766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 5781279 - 5781354
Alignment:
| Q |
15 |
aggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgc |
90 |
Q |
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| T |
5781279 |
aggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattttgtgc |
5781354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 29328248 - 29328035
Alignment:
| Q |
8 |
tctgtgtaggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgcagaatcaaaggtgatgg |
107 |
Q |
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||||| ||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29328248 |
tctgtataggttatgtatgaagaggcaagtcaggtggcaagtgatgctgtcagtagcatcagaactgttgcgtcattttgtgcagaatcaaaggtgatgg |
29328149 |
T |
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| Q |
108 |
acatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattg |
207 |
Q |
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|||||||| | |||||||||| || |||||||||||||| ||||||| |||||||||||||||| |||||||||| | || |||||| |||||||||| |
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| T |
29328148 |
acatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattg |
29328049 |
T |
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| Q |
208 |
cacaaatgctttca |
221 |
Q |
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|||||||||||||| |
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| T |
29328048 |
cacaaatgctttca |
29328035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 26611 - 26686
Alignment:
| Q |
15 |
aggttatgtacgaagaggcaagtcaggtggcaaatgatgccgttagtagcatcagaactgttgcatcattttgtgc |
90 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
26611 |
aggtgatgtatgaagaggcaagtcaggttgcaaatgatgctgttggtagcatcagaactgttgcatcattttgtgc |
26686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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