View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_52 (Length: 214)
Name: NF14438_low_52
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 27985852 - 27985657
Alignment:
| Q |
1 |
acatacagtgcaaatgtttcttggtcttcgttattgcactcatgcatcttcatgtaaggatttatatttattcagtgttgaatttcttgtattcttcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985852 |
acatacagtgcaaatgtttcttggtcttcgttattgcactcatgcatcttcatgtaaggatttatatttattcagtgttgaatttcttgtattcttcagt |
27985753 |
T |
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| Q |
101 |
gtttttctttaattttgaaaataaatgattatcaagattttgatcaat-gaaatggttgaaattgattttcaggtgatgtggaaggtttctgtgtt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985752 |
gtttttctttaattttgaaaataaatgattatcaagattttgatcaatggaaatggttgaaattgattttcaggtgatgtggaaggtttctgtgtt |
27985657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28043154 - 28042959
Alignment:
| Q |
1 |
acatacagtgcaaatgtttcttggtcttcgttattgcactcatgcatcttcatgtaaggatttatatttattcagtgttgaatttcttgtattcttcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28043154 |
acatacagtgcaaatgtttcttggtcttcgttattgcactcatgcatcttcatgtaaggatttatatttattcagtgttgaatttcttgtattcttcagt |
28043055 |
T |
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| Q |
101 |
gtttttctttaattttgaaaataaatgattatcaagattttgatcaat-gaaatggttgaaattgattttcaggtgatgtggaaggtttctgtgtt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28043054 |
gtttttctttaattttgaaaataaatgattatcaagattttgatcaatggaaatggttgaaattgattttcaggtgatgtggaaggtttctgtgtt |
28042959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27240279 - 27240227
Alignment:
| Q |
5 |
acagtgcaaatgtttcttggtcttcgttattgcactcatgcatcttcatgtaa |
57 |
Q |
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||||||| |||||| | ||||||||||| |||||||||||||||| ||||||| |
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| T |
27240279 |
acagtgccaatgttccgtggtcttcgttcttgcactcatgcatctccatgtaa |
27240227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 27240145 - 27240104
Alignment:
| Q |
151 |
aatggttgaaattgattttcaggtgatgtggaaggtttctgt |
192 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||| |
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| T |
27240145 |
aatggttgaatttgattttcaggtgatgtgaaaagtttctgt |
27240104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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