View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_low_53 (Length: 206)

Name: NF14438_low_53
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_low_53
NF14438_low_53
[»] chr7 (2 HSPs)
chr7 (1-188)||(37640972-37641159)
chr7 (46-91)||(39406019-39406064)
[»] chr5 (1 HSPs)
chr5 (47-94)||(18754065-18754112)
[»] chr4 (2 HSPs)
chr4 (47-94)||(36467339-36467386)
chr4 (45-94)||(44454524-44454573)
[»] scaffold0325 (1 HSPs)
scaffold0325 (45-99)||(7958-8012)
[»] chr2 (4 HSPs)
chr2 (37-94)||(8450173-8450230)
chr2 (31-93)||(26004187-26004249)
chr2 (43-89)||(36031016-36031062)
chr2 (36-93)||(8242933-8242990)
[»] chr1 (3 HSPs)
chr1 (47-94)||(38186062-38186108)
chr1 (46-99)||(24588094-24588147)
chr1 (54-94)||(32670134-32670174)
[»] chr6 (1 HSPs)
chr6 (46-94)||(31338982-31339030)
[»] chr3 (2 HSPs)
chr3 (46-94)||(26634566-26634614)
chr3 (30-70)||(48245910-48245950)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 37641159 - 37640972
Alignment:
Q  1 tatataaaaatcaggcaaatcagtcaatcatatctaaataacagggactaaattgacgaattttatatacttcagggactacttattatatttagataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  37641159 tatataaaaatcaggcaaatcagtcaatcatatctaaataacagggactaaattgacaaattttatatacttcagggaatacttattatatttagataac 37641060  T
Q  101 taaattggagagatggtgatagtttaggggttagattgatggtttactccctaactgtgtgctgaaattcaactcaacttttactcat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37641059 taaattggagagatggtgatagtttaggggttagattgatggtttactccctaactgtgtgctgaaattcaactcaacttttactcat 37640972  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 39406019 - 39406064
Alignment:
Q  46 gactaaattgacgaattttatatacttcagggactacttattatat 91  Q
    ||||||||||||| |||||||||| ||||||||||  |||||||||    
T  39406019 gactaaattgacggattttatataattcagggactgtttattatat 39406064  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 18754065 - 18754112
Alignment:
Q  47 actaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||    
T  18754065 actaaattgacgaattttatatactttagaaactacttattatattta 18754112  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 36467386 - 36467339
Alignment:
Q  47 actaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  36467386 actaaattgacggattttatatactttagggactagttattatattta 36467339  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 44454524 - 44454573
Alignment:
Q  45 ggactaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    |||||||||||| ||||||||||||||| || ||||| ||||||||||||    
T  44454524 ggactaaattgatgaattttatatactttagtgactagttattatattta 44454573  T

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Target: scaffold0325 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 8012 - 7958
Alignment:
Q  45 ggactaaattgacgaattttatatacttcagggactacttattatatttagataa 99  Q
    |||||||||||||  ||||||||||||| |||||||||||||| |||||| ||||    
T  8012 ggactaaattgacagattttatatactttagggactacttattttatttacataa 7958  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 8450230 - 8450173
Alignment:
Q  37 aataacagggactaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    ||||||| ||| |||| | || |||||||||||||||||||| |||||||||||||||    
T  8450230 aataacatggattaaagtaacaaattttatatacttcagggattacttattatattta 8450173  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 26004249 - 26004187
Alignment:
Q  31 tatctaaataacagggactaaattgacgaattttatatacttcagggactacttattatattt 93  Q
    ||||| |||| ||||||||||||||| | ||||||||||||||| |||  | |||||||||||    
T  26004249 tatcttaatatcagggactaaattgatggattttatatacttcatggatgatttattatattt 26004187  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 36031062 - 36031016
Alignment:
Q  43 agggactaaattgacgaattttatatacttcagggactacttattat 89  Q
    |||||||||||||| | ||||||| |||||||| |||||||||||||    
T  36031062 agggactaaattgatggattttatgtacttcagtgactacttattat 36031016  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 8242990 - 8242933
Alignment:
Q  36 aaataacagggactaaattgacgaattttatatacttcagggactacttattatattt 93  Q
    |||| ||| |||||||| |||| |||||||||||||| | |||||| |||||||||||    
T  8242990 aaattacatggactaaagtgacaaattttatatactttaaggactaattattatattt 8242933  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 38186108 - 38186062
Alignment:
Q  47 actaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  38186108 actaaattgacgaattttatat-gtttagggactacttattatattta 38186062  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 24588147 - 24588094
Alignment:
Q  46 gactaaattgacgaattttatatacttcagggactacttattatatttagataa 99  Q
    ||||||||| | | ||||||||||||| |||||||| |||||||||||| ||||    
T  24588147 gactaaattaatggattttatatactttagggactaattattatatttaaataa 24588094  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 32670174 - 32670134
Alignment:
Q  54 tgacgaattttatatacttcagggactacttattatattta 94  Q
    |||||||||| |||||||| ||||| |||||||||||||||    
T  32670174 tgacgaatttcatatactttagggattacttattatattta 32670134  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 31338982 - 31339030
Alignment:
Q  46 gactaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    |||||||||||| |||||| ||||||| ||||||| | |||||||||||    
T  31338982 gactaaattgacaaattttgtatactttagggactgcatattatattta 31339030  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 26634566 - 26634614
Alignment:
Q  46 gactaaattgacgaattttatatacttcagggactacttattatattta 94  Q
    ||||| ||| |||||||||||||| || |||||| ||||||||||||||    
T  26634566 gactatattaacgaattttatatagtttagggacaacttattatattta 26634614  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 48245950 - 48245910
Alignment:
Q  30 atatctaaataacagggactaaattgacgaattttatatac 70  Q
    |||||| |||||||| ||||||||||| |||||||||||||    
T  48245950 atatcttaataacagagactaaattgatgaattttatatac 48245910  T

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