View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_54 (Length: 203)
Name: NF14438_low_54
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_54 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 51808358 - 51808525
Alignment:
| Q |
17 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta |
116 |
Q |
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| T |
51808358 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta |
51808457 |
T |
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| Q |
117 |
agatataacatacaacatgcaacgaaattacagttgtta-ttgacctgagattgaccgttgaaaatag |
183 |
Q |
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| T |
51808458 |
agatataacatacaacatgcaacgaaattacagttgttatttgacctgagattgaccgttgaaaatag |
51808525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 51804409 - 51804516
Alignment:
| Q |
17 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta |
116 |
Q |
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| T |
51804409 |
aatatcagaaaactttcaaatatatcgagcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataa-cataaagaattta |
51804507 |
T |
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| Q |
117 |
agatataac |
125 |
Q |
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||||||||| |
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| T |
51804508 |
agatataac |
51804516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 51780640 - 51780679
Alignment:
| Q |
17 |
aatatcagaaaactttcaaatatctcgagcaggcaatttc |
56 |
Q |
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| T |
51780640 |
aatatcagaaaactttcaaatatctcgagcaggcaatttc |
51780679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 7284 - 7335
Alignment:
| Q |
17 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagt |
68 |
Q |
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| T |
7284 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagt |
7335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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