View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14438_low_7 (Length: 480)

Name: NF14438_low_7
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14438_low_7
NF14438_low_7
[»] chr1 (1 HSPs)
chr1 (130-426)||(3567677-3567974)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 130 - 426
Target Start/End: Original strand, 3567677 - 3567974
Alignment:
Q  130 tacttcttgtgtgtgtcgtcagttgcaaaacctctgttgttgcggccgataattgtaacatttcttatttattctttatgaatttttatgtgttctatat 229  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3567677 tacttcctgtttgtgtcgtcatttgcaaaacctctgttgttgcggccaataattgtaacatttcttatttattctttatgaatttttatgtgttctatat 3567776  T
Q  230 aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctaagaagtggagaattgcatattcaa-tcnnnnnnngagggaattgc 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |         ||||||||||    
T  3567777 aaaacacttattttctaatgagtcaagtggcgaaatttacacgcagttagtgctgagaagtggagaattgcatattcaatttttttttttagggaattgc 3567876  T
Q  329 atattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgatgaccaagtcaatacttaatatatgcacatagtatatt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  3567877 atattcaatctattaacttatataatatagtttagtttgtttaatatatattgtagatgattaccaagtcaatacttaatatatgcacataatatatt 3567974  T

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