View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14438_low_9 (Length: 459)
Name: NF14438_low_9
Description: NF14438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14438_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 4633235 - 4632813
Alignment:
| Q |
16 |
agaaccatatttgaatacagctgctataaaattgtacaagaccaaatatctagactatgatactattatggtgagtttggtttgagtattgttttggtga |
115 |
Q |
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| T |
4633235 |
agaaccatatttgaatacagctgctataaaattgtacaagaccaaatatctagactatgatactattatggtgagtttggttt-----------tggtga |
4633147 |
T |
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| Q |
116 |
aatcttatatttttagctattcttaacgtttcatgaggttaaacttgacattggtctatgataaagtttcctcttaaaactcatggttttatgggaatat |
215 |
Q |
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| T |
4633146 |
aatcttataattttagctattcttaacgttttatgaggttaaacttgacattggtctatgataaagtttcctcttaaaactcatggttttatgggaatat |
4633047 |
T |
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| Q |
216 |
ggttgtggactaaatgtaaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcagaacatatatgac |
315 |
Q |
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| T |
4633046 |
gtttgtggactaaatgtaaatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaagcaaatttggagctttagcggaacatatatgac |
4632947 |
T |
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| Q |
316 |
atagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatga |
415 |
Q |
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| T |
4632946 |
atagagaagttgattggctgaaatatcttccacttttccttatttgctttcttgaataatatttttgttgtatcttcatagtttggctgattagtgatga |
4632847 |
T |
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| Q |
416 |
cgacaaatgtgatcaagtttccttattatttgat |
449 |
Q |
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| T |
4632846 |
cgacaaatgtgatcaagtttccttattatttgat |
4632813 |
T |
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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 10168994 - 10169076
Alignment:
| Q |
306 |
catatatgacatagagaagttgattggctgcaatatcttctacttttccttatttgctttcttgaataatatttttgttgtat |
388 |
Q |
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| T |
10168994 |
catatatgacatagagaagttgattggctgcaatatcttctaattttccttatttgtttttttgaataatatttttgttgtat |
10169076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 449
Target Start/End: Complemental strand, 27590971 - 27590929
Alignment:
| Q |
407 |
tagtgatgacgacaaatgtgatcaagtttccttattatttgat |
449 |
Q |
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| T |
27590971 |
tagtggtgacgacaaatgtgatcaaggctccttattatttgat |
27590929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 678967 - 678890
Alignment:
| Q |
172 |
tatgataaagtttcctcttaaaactcatggttttatgggaatatggttgtggactaaa-tgtaaatagatgcatcaaatt |
250 |
Q |
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| T |
678967 |
tatgataaagattcaccttaaaactcatggtttaatgacaatttggttgt--tctaaagtgtaaatagatgcatcaaatt |
678890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 12534275 - 12534323
Alignment:
| Q |
234 |
aatagatgcatcaaattatttagcaaatttagagtcaaatgattaagaa |
282 |
Q |
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| T |
12534275 |
aatagatgcatcaaattgctaggcaaatttagagtcaaataattaagaa |
12534323 |
T |
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