View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_high_1 (Length: 791)
Name: NF14439_high_1
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 19 - 782
Target Start/End: Original strand, 2234852 - 2235614
Alignment:
| Q |
19 |
cttatcataacatctttttatccatcgatgatcataatagctaacgactcaaacccgtcaggaaattgccgtatgtagtggttcgtcattactcctccta |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
2234852 |
cttatcataacatctttttatccatcgatggtcataatagctaacgactcagacctatcagaaaattaccgcatgtagtggttcgtcattactcctccta |
2234951 |
T |
|
| Q |
119 |
tctcctcaatgcatatatgcatgtcaatcacgacacaaaaatgcacaccactttctacccatacatgttggaatggttgcatgcgacacccttatttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2234952 |
tctcctcaatgcatatatgcatgtcaatcacgacacaaaaatgcacaccactttctacccatacatgttggaatggttgcatgtgacacccttatttttg |
2235051 |
T |
|
| Q |
219 |
ctataactagaggatgttcaccggtccaaccaactttcttagtgtgtgtttggcatagcagctaacttgacgctgtcgtacgtttttggaaaagcttgaa |
318 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
2235052 |
ctataactggaggatgtttaccggtccaaccaactttcttagtgtgtgtttggcatagcagctaacttgacgctgccgtgtgtttttggaaaagcttgac |
2235151 |
T |
|
| Q |
319 |
ttcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgctaaaccaaacattagcttaatctaatcaaatcaaaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
2235152 |
ttcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgctaaactaaacattagcttaatctaatcagatcaaaac |
2235251 |
T |
|
| Q |
419 |
aaagtcaaagagtataggttacaaatgattaatcaatagatcctttgaatcgctacccttaattgatcaggtcgtaactcttgaacgacttttttatgca |
518 |
Q |
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| T |
2235252 |
aaagtcaaagaatataggttacaaatggttactcaatagatcctttgaatcgctccccttaattgattaggtcgtaacttttgaac-acttttttatgca |
2235350 |
T |
|
| Q |
519 |
aaaatccaatctaattgtatcgtctttttaaatatcggcccatgagtaaaataattatcggccccataaggaaaaatgaaatgttcacaagaaattgaac |
618 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| | |
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| T |
2235351 |
aaaatccaatctaattgtatcttctttttaaataccggcccatgagtaaaaaaattatcagccccataaggaaaagtgaaatgttcacaagaaattgagc |
2235450 |
T |
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| Q |
619 |
nnnnnnnctaaggtaggctaaagataaggtgacacgcgtcaaaggtggagaacctaacatcctagatgtggggatataaagggtagtgacccgccgcgat |
718 |
Q |
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| T |
2235451 |
tttttttctaaggtaggctaaagataaggtgacacgcgtcaaaggtggagagcctaacatcctagatgtggggatataaagggtagtgacccgccgcgat |
2235550 |
T |
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| Q |
719 |
ttactatccgccgtataagccatctggcatttattcatttattactccattaagatattcttcg |
782 |
Q |
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| T |
2235551 |
ttactatccgccgtataagccatctggcatttattcatttattactccattaagatattgttcg |
2235614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 8297112 - 8297196
Alignment:
| Q |
308 |
aaaagcttgaattcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgctaaaccaaaca |
392 |
Q |
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| T |
8297112 |
aaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgggacacgagaatgctaatctaaatgctaaaccaaaca |
8297196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 392
Target Start/End: Complemental strand, 31440782 - 31440698
Alignment:
| Q |
308 |
aaaagcttgaattcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgctaaaccaaaca |
392 |
Q |
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| T |
31440782 |
aaaaacttgtattcttagcttcacagaatggtggtaaaaaaggcattgggatgcgagaatgctaatttaaacgctaaaccaaaca |
31440698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 33376249 - 33376331
Alignment:
| Q |
308 |
aaaagcttgaattcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgccaattttaacgctaaaccaaa |
390 |
Q |
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| T |
33376249 |
aaaagcttgtattcttagcttcacaaaatggtggtcaaaaaggcattgagactccagaatgctaatttaaacgttaaaccaaa |
33376331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 7413735 - 7413796
Alignment:
| Q |
308 |
aaaagcttgaattcttaacttcacaaaattgcggtcaaaagggcattaggacgcgagaatgc |
369 |
Q |
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| T |
7413735 |
aaaagcttgtattcttaacttcacaaaatggtggtaaaaaatgcattgggatgcgagaatgc |
7413796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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