View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_high_12 (Length: 450)

Name: NF14439_high_12
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_high_12
NF14439_high_12
[»] chr4 (24 HSPs)
chr4 (125-435)||(55081959-55082270)
chr4 (1-96)||(50052424-50052529)
chr4 (1-59)||(6034090-6034148)
chr4 (1-59)||(42044363-42044421)
chr4 (1-59)||(48183045-48183103)
chr4 (1-95)||(41236347-41236451)
chr4 (1-59)||(480443-480501)
chr4 (1-59)||(11511458-11511516)
chr4 (1-59)||(41823928-41823986)
chr4 (1-54)||(29234241-29234294)
chr4 (1-59)||(3481700-3481758)
chr4 (1-96)||(29239885-29239990)
chr4 (1-55)||(53352562-53352616)
chr4 (1-59)||(54473529-54473587)
chr4 (1-95)||(40574779-40574883)
chr4 (1-59)||(23608281-23608339)
chr4 (1-59)||(24995103-24995161)
chr4 (1-59)||(29977931-29977989)
chr4 (1-59)||(31910238-31910296)
chr4 (5-59)||(50526171-50526225)
chr4 (1-59)||(48647722-48647780)
chr4 (4-56)||(28480267-28480319)
chr4 (4-56)||(28481142-28481194)
chr4 (4-56)||(28482017-28482069)
[»] chr8 (22 HSPs)
chr8 (1-94)||(9122196-9122289)
chr8 (1-95)||(34012292-34012396)
chr8 (1-59)||(5957876-5957934)
chr8 (1-59)||(12831093-12831151)
chr8 (1-59)||(14547968-14548026)
chr8 (1-59)||(15197379-15197437)
chr8 (5-59)||(37038525-37038579)
chr8 (1-95)||(1179936-1180040)
chr8 (1-59)||(504117-504175)
chr8 (1-59)||(8841428-8841486)
chr8 (1-59)||(10284627-10284685)
chr8 (1-59)||(23122593-23122651)
chr8 (1-96)||(44507083-44507188)
chr8 (1-90)||(10621083-10621182)
chr8 (1-57)||(40423939-40423995)
chr8 (1-95)||(15048178-15048281)
chr8 (1-59)||(43414577-43414635)
chr8 (56-96)||(4854924-4854964)
chr8 (61-95)||(20075000-20075034)
chr8 (1-59)||(38229474-38229532)
chr8 (1-59)||(42221561-42221619)
chr8 (1-57)||(15258925-15258981)
[»] chr5 (21 HSPs)
chr5 (1-101)||(2740268-2740378)
chr5 (1-90)||(21370019-21370108)
chr5 (1-59)||(35785245-35785303)
chr5 (1-59)||(35943888-35943946)
chr5 (1-95)||(33149634-33149738)
chr5 (1-59)||(18520880-18520938)
chr5 (5-59)||(31009034-31009088)
chr5 (2-59)||(13811698-13811755)
chr5 (1-95)||(40145407-40145511)
chr5 (5-59)||(14831860-14831914)
chr5 (1-59)||(36732938-36732996)
chr5 (1-59)||(42414298-42414356)
chr5 (4-61)||(38296247-38296304)
chr5 (1-59)||(15409606-15409664)
chr5 (1-59)||(28177821-28177879)
chr5 (1-95)||(26720516-26720620)
chr5 (1-95)||(26990265-26990369)
chr5 (1-57)||(31132392-31132448)
chr5 (1-59)||(6679744-6679802)
chr5 (1-37)||(36875608-36875644)
chr5 (14-51)||(41470425-41470462)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-59)||(4075-4133)
[»] chr7 (26 HSPs)
chr7 (1-96)||(3434561-3434666)
chr7 (1-59)||(3784041-3784099)
chr7 (1-61)||(40957751-40957811)
chr7 (1-59)||(3694413-3694471)
chr7 (1-59)||(7389435-7389493)
chr7 (1-96)||(19436183-19436288)
chr7 (1-96)||(36362025-36362130)
chr7 (1-59)||(38267086-38267144)
chr7 (1-96)||(38837216-38837321)
chr7 (1-95)||(19329842-19329946)
chr7 (1-96)||(8080379-8080484)
chr7 (1-59)||(36361909-36361967)
chr7 (1-57)||(32951489-32951545)
chr7 (1-59)||(4999510-4999568)
chr7 (1-59)||(35137579-35137637)
chr7 (1-59)||(35522922-35522980)
chr7 (1-57)||(16374820-16374876)
chr7 (1-96)||(11044187-11044282)
chr7 (1-59)||(8238259-8238317)
chr7 (3-61)||(27744307-27744365)
chr7 (1-59)||(36208219-36208277)
chr7 (56-96)||(26296643-26296683)
chr7 (1-29)||(31735953-31735981)
chr7 (1-57)||(38044245-38044301)
chr7 (1-57)||(40846109-40846165)
chr7 (11-59)||(46374808-46374856)
[»] chr6 (15 HSPs)
chr6 (1-59)||(11427664-11427722)
chr6 (1-59)||(29857873-29857931)
chr6 (1-59)||(23128123-23128181)
chr6 (1-59)||(32869724-32869782)
chr6 (1-59)||(17598600-17598658)
chr6 (1-59)||(22880654-22880712)
chr6 (1-96)||(31976247-31976352)
chr6 (1-56)||(6209461-6209516)
chr6 (1-57)||(31109396-31109452)
chr6 (1-59)||(12732528-12732586)
chr6 (1-59)||(15832623-15832681)
chr6 (1-96)||(31110757-31110860)
chr6 (61-96)||(22422084-22422119)
chr6 (1-59)||(28536484-28536540)
chr6 (1-59)||(4231594-4231652)
[»] chr2 (29 HSPs)
chr2 (1-59)||(17473066-17473124)
chr2 (1-59)||(5574484-5574542)
chr2 (1-59)||(10249378-10249436)
chr2 (1-59)||(13438389-13438447)
chr2 (1-59)||(28863501-28863559)
chr2 (1-59)||(40701524-40701582)
chr2 (5-57)||(4060733-4060785)
chr2 (1-59)||(7465731-7465789)
chr2 (1-59)||(9058526-9058584)
chr2 (1-96)||(20700814-20700919)
chr2 (5-59)||(32505648-32505702)
chr2 (1-96)||(33436096-33436201)
chr2 (1-59)||(28381651-28381709)
chr2 (1-96)||(30915462-30915567)
chr2 (1-57)||(19930816-19930872)
chr2 (1-57)||(27864752-27864808)
chr2 (1-59)||(38273138-38273196)
chr2 (1-59)||(40613898-40613956)
chr2 (1-59)||(3440025-3440083)
chr2 (1-59)||(17820000-17820058)
chr2 (1-59)||(42257239-42257297)
chr2 (1-57)||(38882807-38882866)
chr2 (1-57)||(2533171-2533227)
chr2 (1-55)||(3154193-3154247)
chr2 (5-59)||(3737989-3738043)
chr2 (1-59)||(26891500-26891558)
chr2 (1-59)||(38732400-38732458)
chr2 (56-94)||(41575138-41575176)
chr2 (1-58)||(36168883-36168940)
[»] chr1 (24 HSPs)
chr1 (1-95)||(47452316-47452420)
chr1 (1-61)||(44548372-44548432)
chr1 (1-60)||(50630503-50630562)
chr1 (5-96)||(51898683-51898784)
chr1 (1-95)||(27564731-27564835)
chr1 (1-59)||(43178-43236)
chr1 (5-59)||(2581961-2582015)
chr1 (1-59)||(3000365-3000423)
chr1 (1-59)||(8346384-8346442)
chr1 (1-59)||(9474872-9474930)
chr1 (1-59)||(38595200-38595258)
chr1 (1-96)||(38632317-38632422)
chr1 (1-95)||(48716278-48716382)
chr1 (1-61)||(44454023-44454083)
chr1 (1-59)||(32813293-32813351)
chr1 (1-57)||(41758853-41758909)
chr1 (1-59)||(13414807-13414865)
chr1 (1-59)||(26440780-26440838)
chr1 (1-59)||(37649244-37649302)
chr1 (5-57)||(48489348-48489400)
chr1 (5-57)||(11152378-11152430)
chr1 (1-57)||(26274480-26274536)
chr1 (1-59)||(5958996-5959054)
chr1 (1-59)||(37926434-37926492)
[»] chr3 (22 HSPs)
chr3 (1-59)||(33644246-33644304)
chr3 (1-59)||(49607460-49607518)
chr3 (1-59)||(53982057-53982115)
chr3 (1-59)||(54868891-54868949)
chr3 (1-59)||(8076439-8076497)
chr3 (1-59)||(17470451-17470509)
chr3 (1-59)||(31456735-31456793)
chr3 (1-59)||(52629346-52629404)
chr3 (2-96)||(27714888-27714992)
chr3 (1-51)||(48587087-48587137)
chr3 (1-57)||(36707424-36707476)
chr3 (1-59)||(26141528-26141586)
chr3 (1-59)||(33118847-33118905)
chr3 (3-51)||(9563053-9563101)
chr3 (1-59)||(20764911-20764969)
chr3 (1-59)||(51419356-51419414)
chr3 (1-57)||(26754743-26754799)
chr3 (1-96)||(11095351-11095454)
chr3 (56-95)||(14623900-14623939)
chr3 (1-59)||(41189760-41189818)
chr3 (1-57)||(11347918-11347974)
chr3 (1-61)||(30801729-30801789)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-95)||(925-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-95)||(925-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-57)||(10105-10161)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-57)||(17102-17158)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-59)||(152544-152602)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 125 - 435
Target Start/End: Complemental strand, 55082270 - 55081959
Alignment:
Q  125 tagattctttacttaacattttatcgtaatacgaaaaatgtcctttgagcacaaaagatttnnnnnnn-tgttttttcatctctaactctaaatcatcac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||        |||||||||||||||||||||||||||||||    
T  55082270 tagattctttacttaacattttatcgtaatacgaaaaatgtcctt-gagcataaaagatttaaaaaaaatgttttttcatctctaactctaaatcatcac 55082172  T
Q  224 ctcacacacaaacatctatcgaaggcgaccaaattagatgaaatattaagatagaagcaaaa-ttcttccattaacaaaccattgtatgtatagctgaca 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55082171 ctcacacacaaacatctattgaaggcgaccaaattagatgaaatattaagatagaagcaaaagttcttccattaacaaaccattgtatgtatagctgaca 55082072  T
Q  323 tgccatcttaccattttctactttttaaaaattattttcaacacctacataaacttatacgtatataatttaggtggtaaataaactcaattcagctacg 422  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55082071 tgccatcttaccattttctactttttaaaaattattttcaacacatatgtaaacttatacgtatataatttaggtggtaaataaactcaattcagctagg 55081972  T
Q  423 tgtatgtacattt 435  Q
    |||||||| ||||    
T  55081971 tgtatgtaaattt 55081959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 50052424 - 50052529
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  50052424 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 50052523  T
Q  91 tactct 96  Q
    ||||||    
T  50052524 tactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6034148 - 6034090
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6034148 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggt 6034090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42044363 - 42044421
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  42044363 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 42044421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48183045 - 48183103
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  48183045 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 48183103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41236451 - 41236347
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||          ||| |||| |||||||||| ||||||||||||||    
T  41236451 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 41236352  T
Q  91 tactc 95  Q
    |||||    
T  41236351 tactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 480443 - 480501
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  480443 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggt 480501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11511458 - 11511516
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  11511458 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggt 11511516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41823986 - 41823928
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  41823986 aaagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggt 41823928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29234241 - 29234294
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtg 54  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  29234241 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtg 29234294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3481758 - 3481700
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||    
T  3481758 aaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggt 3481700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29239990 - 29239885
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||          ||| |||| |||||||||| ||||||||||||||    
T  29239990 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcat 29239891  T
Q  91 tactct 96  Q
    ||||||    
T  29239890 tactct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 53352562 - 53352616
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt 55  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  53352562 aaagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgt 53352616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54473529 - 54473587
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  54473529 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggt 54473587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40574883 - 40574779
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||| ||||||||| ||| |  ||||||||||||||||||          |||| ||||||||||||||||||||||||||||||    
T  40574883 aaagagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 40574784  T
Q  91 tactc 95  Q
     ||||    
T  40574783 aactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23608339 - 23608281
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||  | ||||| ||||||||||||||||||||||||||    
T  23608339 aaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggt 23608281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24995103 - 24995161
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||| |||||| |||||||    
T  24995103 aaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggt 24995161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29977989 - 29977931
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||  | ||||||||||||||||||||||||||    
T  29977989 aaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggt 29977931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31910296 - 31910238
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| ||  ||| |||||||||||||||||||||    
T  31910296 aaagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggt 31910238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 50526171 - 50526225
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||| |||||||||||| |||||||| || |||||||||||||||||||||||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggt 50526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48647722 - 48647780
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||||||||||||  ||||||| || |||||| |||||||| |||||||    
T  48647722 aaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggt 48647780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28480267 - 28480319
Alignment:
Q  4 gagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg 56  Q
    ||||||||||| ||||| ||| ||||| | ||||| |||||||||||||||||    
T  28480267 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtg 28480319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28481142 - 28481194
Alignment:
Q  4 gagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg 56  Q
    ||||||||||| ||||| ||| ||||| | ||||| |||||||||||||||||    
T  28481142 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtg 28481194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28482017 - 28482069
Alignment:
Q  4 gagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg 56  Q
    ||||||||||| ||||| ||| ||||| | ||||| |||||||||||||||||    
T  28482017 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtg 28482069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9122289 - 9122196
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtatattaccacctaaggatgtctatgtatcattact 94  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  9122289 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtattgccacctaagggtgtctatgtatcattact 9122196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 34012292 - 34012396
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||          |||| ||||||||||||||| ||||||||||||||    
T  34012292 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 34012391  T
Q  91 tactc 95  Q
    |||||    
T  34012392 tactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5957934 - 5957876
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  5957934 aaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 5957876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12831151 - 12831093
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  12831151 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 12831093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14548026 - 14547968
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  14548026 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 14547968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15197437 - 15197379
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 15197379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 37038579 - 37038525
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 37038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1179936 - 1180040
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||          |||| ||||||||||||||| ||||||||||||||    
T  1179936 aaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 1180035  T
Q  91 tactc 95  Q
    |||||    
T  1180036 tactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 504117 - 504175
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  504117 aaagagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 504175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8841428 - 8841486
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  8841428 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggt 8841486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10284627 - 10284685
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  10284627 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggt 10284685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23122593 - 23122651
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  23122593 aaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggt 23122651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 44507083 - 44507188
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg----------gtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||          || ||||||||||||||| ||||||||||||||    
T  44507083 aaagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcat 44507182  T
Q  91 tactct 96  Q
    ||||||    
T  44507183 tactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10621083 - 10621182
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||    
T  10621083 aaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40423939 - 40423995
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  40423939 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgg 40423995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15048178 - 15048281
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt---------gggtatattaccacctaaggatgtctatgtatcatt 91  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||||||||||||         |||| |||| |||||||||||||||||||||||||     
T  15048178 aaagagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtggtgtcaaagggtgtattgccacctaaggatgtctatgtatcata 15048277  T
Q  92 actc 95  Q
    ||||    
T  15048278 actc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43414577 - 43414635
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||    
T  43414577 aaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggt 43414635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 4854924 - 4854964
Alignment:
Q  56 gggtatattaccacctaaggatgtctatgtatcattactct 96  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  4854924 gggtgtattgccacctaaggatgtctatgtatcattactct 4854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 20075000 - 20075034
Alignment:
Q  61 tattaccacctaaggatgtctatgtatcattactc 95  Q
    |||| ||||||||||||||||||||||||||||||    
T  20075000 tattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38229532 - 38229474
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| ||||||||| | | |||||||| || || ||||||||||||||||||||    
T  38229532 aaagagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggt 38229474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42221619 - 42221561
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||  ||| ||||  | | ||||||||||||||||||||||||    
T  42221619 aaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggt 42221561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15258925 - 15258981
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||| ||||||||||| || ||||||| || || |||||||||||| |||||    
T  15258925 aaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtgg 15258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2740378 - 2740268
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||          |||| |||| |||||||||||||||||||||||||    
T  2740378 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 2740279  T
Q  91 tactctgaaca 101  Q
    |||||| ||||    
T  2740278 tactctaaaca 2740268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 21370108 - 21370019
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||| |||| ||||||||| ||||||| || || ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  21370108 aaagagaaaatgtgtttgtgcggggtccacgtgaccacatgtcagatttttgagtgggtgtattaccacctaaggatgtctatgtatcat 21370019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35785303 - 35785245
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35785303 aaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 35785245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35943888 - 35943946
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35943888 aaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggt 35943946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33149634 - 33149738
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||          |||| ||||||||||||||| ||||||||||||||    
T  33149634 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 33149733  T
Q  91 tactc 95  Q
    |||||    
T  33149734 tactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18520880 - 18520938
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  18520880 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 18520938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 31009088 - 31009034
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 31009034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 13811755 - 13811698
Alignment:
Q  2 aagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 13811698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40145511 - 40145407
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||          |||| |||| |||||||||| ||||||||||||||    
T  40145511 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcat 40145412  T
Q  91 tactc 95  Q
    |||||    
T  40145411 tactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 14831914 - 14831860
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggt 14831860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36732938 - 36732996
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  36732938 aaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggt 36732996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42414298 - 42414356
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  42414298 aaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggt 42414356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 38296304 - 38296247
Alignment:
Q  4 gagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||    
T  38296304 gagaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtat 38296247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15409606 - 15409664
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||| |||||||||||||||| |||| ||  |||||||||||||||||||||||||    
T  15409606 aaagagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggt 15409664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28177879 - 28177821
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| |||| || || |||||||||||||||||||||||    
T  28177879 aaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggt 28177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26720620 - 26720516
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||||||||||||| ||  | ||||||||||||||| |||          |||| |||| |||||||||||||||||||||||||    
T  26720620 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26720521  T
Q  91 tactc 95  Q
     ||||    
T  26720520 aactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26990369 - 26990265
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||||||||||||| ||  | ||||||||||||||| |||          |||| |||| |||||||||||||||||||||||||    
T  26990369 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26990270  T
Q  91 tactc 95  Q
     ||||    
T  26990269 aactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31132448 - 31132392
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  31132448 aaagaaaaagtatgcttgtgcggggtccacgtgactacttgtcagatttttgtgtgg 31132392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6679802 - 6679744
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||| ||||||||| |||| || || |||||||||||||||||||||||    
T  6679802 aaagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggt 6679744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36875608 - 36875644
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaacta 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36875608 aaagagaaagtgtgcttgtgcgggatccacgtgacta 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 41470425 - 41470462
Alignment:
Q  14 gcttgtgcgggatccacgtaactacgtgtcagattttt 51  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  41470425 gcttgtgcggggtccacgtgactacgtgtcagattttt 41470462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4133 - 4075
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4133 aaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggt 4075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3434666 - 3434561
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||          |||| |||| |||||||||||||||||||||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 3434567  T
Q  91 tactct 96  Q
    ||||||    
T  3434566 tactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3784099 - 3784041
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3784099 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 3784041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40957811 - 40957751
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  40957811 aaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtat 40957751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3694471 - 3694413
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggt 3694413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7389493 - 7389435
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 7389435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 19436183 - 19436288
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat----------attaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |          |||  ||||||||||||||||||||||||    
T  19436183 aaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcat 19436282  T
Q  91 tactct 96  Q
    ||||||    
T  19436283 tactct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 36362130 - 36362025
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtggg----------tatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||          | ||||||||||||||| ||||||||||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcat 36362031  T
Q  91 tactct 96  Q
    ||||||    
T  36362030 tactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38267144 - 38267086
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 38267086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38837321 - 38837216
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||          |||| |||| |||||||||| ||||||||||||||    
T  38837321 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcat 38837222  T
Q  91 tactct 96  Q
    ||||||    
T  38837221 tactct 38837216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19329946 - 19329842
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||          ||| |||| |||||||||||||||||||||||||    
T  19329946 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 19329847  T
Q  91 tactc 95  Q
    |||||    
T  19329846 tactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8080379 - 8080484
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||          |||| |||| |||||||||| ||||||||||||||    
T  8080379 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 8080478  T
Q  91 tactct 96  Q
    ||||||    
T  8080479 tactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36361909 - 36361967
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggt 36361967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32951489 - 32951545
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  32951489 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgg 32951545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4999510 - 4999568
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  4999510 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggt 4999568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35137637 - 35137579
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  35137637 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggt 35137579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35522980 - 35522922
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||  |  | |||||||||||||||||||||||    
T  35522980 aaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggt 35522922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16374820 - 16374876
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||| ||||||||||| | ||||||||| || |||||||||||||||||||||    
T  16374820 aaagagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtgg 16374876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11044282 - 11044187
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtatattaccacctaaggatgtctatgtatcattactct 96  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||   | |    || | |||| |||||||||| ||||||||||||||||||||    
T  11044282 aaagagaaagtgtacttgtgcggggtccacgtgactacgtgtcaggggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 11044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8238317 - 8238259
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||| |||||||||| ||||  | ||||| ||||||||||||||||||||    
T  8238317 aaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggt 8238259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 27744307 - 27744365
Alignment:
Q  3 agagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    ||||||| ||||||| || |||||||||||  | || ||||||||||||||||||||||    
T  27744307 agagaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgtgtgggtat 27744365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36208277 - 36208219
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| ||||||||||| || ||||||| || || |||||| |||||||||||||    
T  36208277 aaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggt 36208219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 26296683 - 26296643
Alignment:
Q  56 gggtatattaccacctaaggatgtctatgtatcattactct 96  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  26296683 gggtatattgtcacctaaggatgtctatgtatcataactct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31735981 - 31735953
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatcca 29  Q
    |||||||||||||||||||||||||||||    
T  31735981 aaagagaaagtgtgcttgtgcgggatcca 31735953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38044301 - 38044245
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||| |||||||||| ||||  |  |||| ||||||||||||||||||    
T  38044301 aaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtgg 38044245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40846109 - 40846165
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||  ||||||||| ||||  ||||||| ||| ||||||||||||||    
T  40846109 aaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtgg 40846165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 46374808 - 46374856
Alignment:
Q  11 tgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| |||| ||  | |||||||||||||||||||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggt 46374856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11427722 - 11427664
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11427722 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 11427664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29857931 - 29857873
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29857931 aaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggt 29857873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23128123 - 23128181
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  23128123 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggt 23128181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32869782 - 32869724
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  32869782 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 32869724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17598658 - 17598600
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  17598658 aaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggt 17598600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22880654 - 22880712
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  22880654 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggt 22880712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31976352 - 31976247
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| | || || || |||||||||||||||||||          ||||||||| |||||||||||||||||||||||||    
T  31976352 aaagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcat 31976253  T
Q  91 tactct 96  Q
     |||||    
T  31976252 aactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6209461 - 6209516
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg 56  Q
    |||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||    
T  6209461 aaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtg 6209516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31109396 - 31109452
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||| ||| |||||| || |||| ||||||||||||||||||||||||    
T  31109396 aaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtgg 31109452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12732586 - 12732528
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| ||||||| || ||||||||| || | |||||||||||||||||||||||    
T  12732586 aaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggt 12732528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15832681 - 15832623
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||  |||||| |||||||||| ||||||||||| ||||||||||||||    
T  15832681 aaagagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggt 15832623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31110757 - 31110860
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtg--------tgggtatattaccacctaaggatgtctatgtatcatta 92  Q
    ||||||||||||||||||||| || |||| ||   |||||||||||||||||||         |||| |||| ||||||||||||||||||||||||| |    
T  31110757 aaagagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 31110856  T
Q  93 ctct 96  Q
    ||||    
T  31110857 ctct 31110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 22422084 - 22422119
Alignment:
Q  61 tattaccacctaaggatgtctatgtatcattactct 96  Q
    |||| |||||||||||||||||||||||||||||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28536484 - 28536540
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||| | ||  ||||||||||||||||||||||    
T  28536484 aaagagaaagtgtgcttgtgtggggtccacatgac--cgtgtcagatttttgtgtgggt 28536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4231652 - 4231594
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||| |||||||||| ||||  |  | |||||||||||||||||||||||    
T  4231652 aaagagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggt 4231594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17473124 - 17473066
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17473124 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggt 17473066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5574484 - 5574542
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggt 5574542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10249378 - 10249436
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  10249378 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 10249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13438447 - 13438389
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  13438447 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 13438389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28863559 - 28863501
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28863559 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 28863501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40701582 - 40701524
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  40701582 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggt 40701524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 4060785 - 4060733
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgg 4060733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7465731 - 7465789
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  7465731 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggt 7465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9058584 - 9058526
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  9058584 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggt 9058526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20700919 - 20700814
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||          |||| |||| |||| ||||||||||||||||||||    
T  20700919 aaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcat 20700820  T
Q  91 tactct 96  Q
    ||||||    
T  20700819 tactct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 32505648 - 32505702
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 32505702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33436096 - 33436201
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat----------attaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |          ||| |||||||||| ||||||||||||||    
T  33436096 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 33436195  T
Q  91 tactct 96  Q
    ||||||    
T  33436196 tactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28381651 - 28381709
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||  |||| || ||||||||||||||||||||||||||    
T  28381651 aaagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggt 28381709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 30915567 - 30915462
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||          |||| |||| |||||||||| ||||||||||||||    
T  30915567 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcat 30915468  T
Q  91 tactct 96  Q
    ||||||    
T  30915467 tactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19930816 - 19930872
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||    
T  19930816 aaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtgg 19930872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27864808 - 27864752
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  27864808 aaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtgg 27864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38273138 - 38273196
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||| ||||||| |||| ||  |||||||||||||||||||||||||    
T  38273138 aaagagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggt 38273196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40613898 - 40613956
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| ||  | |||||||||||||||||||||||    
T  40613898 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggt 40613956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3440083 - 3440025
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||||||||||||| |||||||||  || ||| ||||||||||||||||    
T  3440083 aaagagaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggt 3440025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17820000 - 17820058
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||| ||||| ||| |||||||||| || ||||||||||||||||||||    
T  17820000 aaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggt 17820058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42257297 - 42257239
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| ||  | ||||||||||||||| |||||||    
T  42257297 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggt 42257239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38882807 - 38882866
Alignment:
Q  1 aaagagaaagtgtgcttgtgcggga---tccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||| |||||||||||    ||||||| ||||||||||||||||||||||||    
T  38882807 aaagagaaagtgcgcttgtgcgggggggtccacgtgactacgtgtcagatttttgtgtgg 38882866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2533227 - 2533171
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||| |||||||||||||||||| || | ||  |||||||||||||||||||||||    
T  2533227 aaagaaaaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg 2533171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3154247 - 3154193
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt 55  Q
    ||||||||| |||| ||| |||||||||| || || |||||||||||||||||||    
T  3154247 aaagagaaactgtgtttgggcgggatccatgtgaccacgtgtcagatttttgtgt 3154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 3738043 - 3737989
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||| |||||||||||||| ||||| | || || ||||||||||||||||||||    
T  3738043 agaaaatgtgcttgtgcggggtccacatgaccacatgtcagatttttgtgtgggt 3737989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26891500 - 26891558
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| ||||||||| || | ||||||| || || ||||||||||||||||||||    
T  26891500 aaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggt 26891558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38732458 - 38732400
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||| |||||||||| ||||  | || || ||||||||||||||||||||    
T  38732458 aaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggt 38732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 41575176 - 41575138
Alignment:
Q  56 gggtatattaccacctaaggatgtctatgtatcattact 94  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  41575176 gggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36168940 - 36168883
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtggg 58  Q
    ||||||||||| |||||||||||| |||| ||  | |||||||| |||||||||||||    
T  36168940 aaagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtggg 36168883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 47452316 - 47452420
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||          |||| ||||||||||||||| ||||||||||||||    
T  47452316 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 47452415  T
Q  91 tactc 95  Q
    |||||    
T  47452416 tactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44548372 - 44548432
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  44548372 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtat 44548432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50630562 - 50630503
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggta 60  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  50630562 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggta 50630503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 51898683 - 51898784
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat----------attaccacctaaggatgtctatgtatcattact 94  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |          ||| |||||||| ||||||||||||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  95 ct 96  Q
    ||    
T  51898783 ct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27564731 - 27564835
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||          ||| |||| |||||||||||||||||||||||||    
T  27564731 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 27564830  T
Q  91 tactc 95  Q
    |||||    
T  27564831 tactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43236 - 43178
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  43236 aaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggt 43178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 2582015 - 2581961
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 2581961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3000423 - 3000365
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggt 3000365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8346384 - 8346442
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  8346384 aaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggt 8346442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9474872 - 9474930
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  9474872 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 9474930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38595258 - 38595200
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggt 38595200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38632317 - 38632422
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||          ||| |||| |||||||||| ||||||||||||||    
T  38632317 aaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcat 38632416  T
Q  91 tactct 96  Q
    ||||||    
T  38632417 tactct 38632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 48716278 - 48716382
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtg----------ggtatattaccacctaaggatgtctatgtatcat 90  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||          ||| |||| |||||||||| ||||||||||||||    
T  48716278 aaagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcat 48716377  T
Q  91 tactc 95  Q
    |||||    
T  48716378 tactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44454083 - 44454023
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  44454083 aaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtat 44454023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32813351 - 32813293
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| || || |||||||||||||||||||||||    
T  32813351 aaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggt 32813293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41758909 - 41758853
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||    
T  41758909 aaagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtgg 41758853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13414865 - 13414807
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||||    
T  13414865 aaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggt 13414807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26440838 - 26440780
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||| ||||||||||| ||  | |||||||||||||||||||||||    
T  26440838 aaagagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggt 26440780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37649302 - 37649244
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||| |||||||||||||||||| || ||||| || |||||||||||||||||||||||    
T  37649302 aaagggaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggt 37649244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 48489400 - 48489348
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||| |||||||||||||||||||||| || || ||||||||||||||||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtgg 48489348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 11152378 - 11152430
Alignment:
Q  5 agaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||| ||||||||||||| || || | ||||||||||||||||||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtgg 11152430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26274536 - 26274480
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||| ||||||| ||||||| |||||||||| |||| ||||||||||||| |||||    
T  26274536 aaagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtgg 26274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5958996 - 5959054
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||| |||||||||| ||||  | || || ||||||||||||||||||||    
T  5958996 aaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggt 5959054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37926434 - 37926492
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||| ||||| ||||||||| ||  | ||||||||||||||| |||||||    
T  37926434 aaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggt 37926492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33644304 - 33644246
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33644304 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 33644246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49607518 - 49607460
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  49607518 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggt 49607460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 53982115 - 53982057
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  53982115 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 53982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 54868891 - 54868949
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  54868891 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggt 54868949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8076497 - 8076439
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  8076497 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggt 8076439  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17470509 - 17470451
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  17470509 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggt 17470451  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31456793 - 31456735
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  31456793 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggt 31456735  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52629404 - 52629346
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  52629404 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggt 52629346  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 27714888 - 27714992
Alignment:
Q  2 aagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat----------attaccacctaaggatgtctatgtatcatt 91  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |          |||||||||||| | |||||||||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatt 27714987  T
Q  92 actct 96  Q
    |||||    
T  27714988 actct 27714992  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48587087 - 48587137
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagattttt 51  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagattttt 48587137  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36707424 - 36707476
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    |||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  36707424 aaagagaaagtgtgc----gcgggatccacgtaactacgtgtcagatttttgtgtgg 36707476  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26141528 - 26141586
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||| ||| |||| || || |||||||||||||||||||||||    
T  26141528 aaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggt 26141586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33118847 - 33118905
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||    
T  33118847 aaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggt 33118905  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 9563101 - 9563053
Alignment:
Q  3 agagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagattttt 51  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagattttt 9563053  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20764911 - 20764969
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    ||||||||||||||||||| |||| |||| ||  | |||||||||||||||||||||||    
T  20764911 aaagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggt 20764969  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51419356 - 51419414
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| || | ||  | |||||||||||||||||||||||    
T  51419356 aaagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggt 51419414  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26754799 - 26754743
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||| |||||||||||||| |||| || || || ||||||||||||||||||    
T  26754799 aaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtgg 26754743  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11095351 - 11095454
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat----------attaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||| || |||||| |  |||| |||||||||||||||||||||||||| |          ||| |||||||||| ||||||||||||||    
T  11095351 aaagagaaagtgtgtttatgcggggt--acgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 11095448  T
Q  91 tactct 96  Q
    ||||||    
T  11095449 tactct 11095454  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 14623900 - 14623939
Alignment:
Q  56 gggtatattaccacctaaggatgtctatgtatcattactc 95  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  14623900 gggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41189760 - 41189818
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||||||||||||| |||| ||  | |||||||| |||||| |||||||    
T  41189760 aaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggt 41189818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11347918 - 11347974
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||||||| ||| || |||| ||  | |||||||||||||||||||||    
T  11347918 aaagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtgg 11347974  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30801729 - 30801789
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtat 61  Q
    ||||||||| |||||||||| ||| ||||  | ||||| ||||| ||||||||||||||||    
T  30801729 aaagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtat 30801789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 925 - 1029
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||          |||| |||| |||||||| ||||||||||||||||    
T  925 aaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcat 1024  T
Q  91 tactc 95  Q
    |||||    
T  1025 tactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 925 - 1029
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgt----------gggtatattaccacctaaggatgtctatgtatcat 90  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||          |||| |||| |||||||| ||||||||||||||||    
T  925 aaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcat 1024  T
Q  91 tactc 95  Q
    |||||    
T  1025 tactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10105 - 10161
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||||||||||||| || | ||||||| |||||||||||||||||| |||||    
T  10105 aaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtgg 10161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17158 - 17102
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgg 57  Q
    ||||||||| |||||||||||||| |||| || || || ||||||||||||||||||    
T  17158 aaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtgg 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 152602 - 152544
Alignment:
Q  1 aaagagaaagtgtgcttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggt 59  Q
    |||||||||||||  ||||||||||||||  | || || ||||||||||||||||||||    
T  152602 aaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggt 152544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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