View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_high_14 (Length: 419)

Name: NF14439_high_14
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_high_14
NF14439_high_14
[»] chr2 (5 HSPs)
chr2 (1-144)||(3342360-3342503)
chr2 (210-400)||(38288434-38288620)
chr2 (210-401)||(31395150-31395335)
chr2 (246-385)||(13486134-13486272)
chr2 (1-66)||(3334984-3335049)
[»] chr8 (5 HSPs)
chr8 (225-403)||(14958005-14958183)
chr8 (331-392)||(9293232-9293293)
chr8 (295-403)||(15292549-15292656)
chr8 (295-403)||(15472918-15473025)
chr8 (188-259)||(4490289-4490358)
[»] chr6 (5 HSPs)
chr6 (237-403)||(33908569-33908728)
chr6 (210-403)||(1415485-1415678)
chr6 (210-403)||(9627132-9627307)
chr6 (312-403)||(12155384-12155473)
chr6 (219-283)||(12155952-12156016)
[»] chr5 (3 HSPs)
chr5 (212-393)||(7237068-7237249)
chr5 (225-402)||(41715034-41715209)
chr5 (293-403)||(38755682-38755789)
[»] chr4 (1 HSPs)
chr4 (222-403)||(865235-865414)
[»] chr1 (7 HSPs)
chr1 (338-400)||(28666876-28666938)
chr1 (222-390)||(6397661-6397826)
chr1 (191-403)||(7440792-7441000)
chr1 (191-259)||(41941065-41941131)
chr1 (188-259)||(37259020-37259089)
chr1 (211-259)||(42517114-42517162)
chr1 (368-404)||(41941221-41941257)
[»] chr3 (5 HSPs)
chr3 (305-403)||(8543100-8543200)
chr3 (295-400)||(11630080-11630186)
chr3 (218-357)||(43361591-43361730)
chr3 (318-391)||(8541441-8541515)
chr3 (210-252)||(8540994-8541036)
[»] scaffold0035 (1 HSPs)
scaffold0035 (220-398)||(24397-24574)
[»] chr7 (2 HSPs)
chr7 (363-399)||(15077104-15077140)
chr7 (215-253)||(43814455-43814493)
[»] scaffold0154 (1 HSPs)
scaffold0154 (218-273)||(19338-19391)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 3342360 - 3342503
Alignment:
Q  1 cttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcacttgtannnnnnncctcatttcttgcgggaaaatcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  3342360 cttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcacttgtatttttttcctcatttcttgcgggacaatcac 3342459  T
Q  101 taccttctataagatgaaaatcaagattctacttttgggatgag 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3342460 taccttctataagatgaaaatcaagattctacttttgggatgag 3342503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 400
Target Start/End: Complemental strand, 38288620 - 38288434
Alignment:
Q  210 gaatcgtagtagtactatatatat--tgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagag 307  Q
    |||||||||||||| |||||||||  ||||| ||| | ||||||| ||||||| |||| ||||||||||||| |||  ||    ||||||||| |||       
T  38288620 gaatcgtagtagtattatatatatattgcttataacattgaaaccctaattctcatcatagaaatagaaacataactataaatgctctatagtcgca--- 38288524  T
Q  308 gtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgtt 400  Q
       |  |||||||| ||||||| ||||| ||||||| |||||| |||||| |||||||||  |||||||||||||||||||||||||||||||    
T  38288523 ---attacaattggccgaactacgttaacaaatatcatgtgttaattgtctttctctttcaatctcttatttaatcttttgttactagttgtt 38288434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 401
Target Start/End: Complemental strand, 31395335 - 31395150
Alignment:
Q  210 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 309  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    ||| ||| |||| |||| |||   ||||  || |||||   || || |    
T  31395335 gaatcgtagtagtactatatatattgcttgtaacactgaaaccctaatc---atcgcagtaatataaacggaattatagctgctttatagc--catagat 31395241  T
Q  310 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttg 401  Q
    |||||| ||||| ||| || |||||| ||||||| ||||||||||||| ||  |||||||| |||||||| || ||||||||||||||||||    
T  31395240 aagcaccattggacgagctgtgttaacaaatatcatgtgttcattgtcttttactttcgttttcttattt-atattttgttactagttgttg 31395150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 13486272 - 13486134
Alignment:
Q  246 tgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgt 345  Q
    ||||||| |||||||| |||||| |||||||| |||||  |||    ||||||||  || ||||| | ||||||| | ||||| |||||| |||||| ||    
T  13486272 tgaaaccctaattcttgtcacagtaatagaaatagaacaatagttgatctatagtcacataggtaggtacaattgattgaactgtgttaaaaaatattgt 13486173  T
Q  346 gtgttcattgtcattctctttcgttctcttatttaatctt 385  Q
     ||||||||||  || ||||||||||||||||||||||||    
T  13486172 atgttcattgttttt-tctttcgttctcttatttaatctt 13486134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3334984 - 3335049
Alignment:
Q  1 cttacatttgctacatttcgaggagctggccatgatgtgcctacttttaaaccaagcaattcactt 66  Q
    ||||| |||||||||||| |||||||||| ||||  |||||   ||||||||||||||||||||||    
T  3334984 cttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcactt 3335049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 225 - 403
Target Start/End: Original strand, 14958005 - 14958183
Alignment:
Q  225 tatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcg 324  Q
    |||||||||||||||||| ||||||||| |||||||| |||||| |||||||||| |||  ||||  ||||||| | ||||||||| |||||||||| ||    
T  14958005 tatatatattgcttgtaacactgaaaccctaattcttctcacagtaatagaaacataactatagctgctctataatcgcagaggtaggcacaattggccg 14958104  T
Q  325 aactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    |||| |||||| ||||||| | ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  14958105 aactgtgttaacaaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgttgtt 14958183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 9293293 - 9293232
Alignment:
Q  331 gttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttac 392  Q
    ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatcttttgttac 9293232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 15292656 - 15292549
Alignment:
Q  295 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttacta 394  Q
    |||||| | |||| || |||||||||||||||||  ||||| || |||||||||||||||  | ||  ||||||||||||||||||||||| | ||||      
T  15292656 tatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttatttaatcttctcttaccg 15292558  T
Q  395 gttgttgtt 403  Q
    |||||||||    
T  15292557 gttgttgtt 15292549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 15473025 - 15472918
Alignment:
Q  295 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttacta 394  Q
    |||||| | |||| || |||||||||||||||||  ||||| || |||||||||||||||  | ||  ||||||||||||||||||||||| | ||||      
T  15473025 tatagtcgtagagataggcacaattggtcgaactgcgttaacaa-tatcgtgtgttcattaacttttactttcgttctcttatttaatcttctcttaccg 15472927  T
Q  395 gttgttgtt 403  Q
    |||||||||    
T  15472926 gttgttgtt 15472918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 4490289 - 4490358
Alignment:
Q  188 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 259  Q
    ||||| ||||||||||||||||  ||  | ||| ||||||||||||||| || || ||||||||||||||||    
T  4490289 ggatattattgtaaactgaatc--ataattgtattactatatatattgcatgcaacactgaaaccttaattc 4490358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 33908728 - 33908569
Alignment:
Q  237 ttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcgaactatgttaat 336  Q
    |||||| ||||||||| |||||| |||||||| ||||||||| ||||  ||||  ||||||||       |||| |||||||||||||||||  |||||     
T  33908728 ttgtaacactgaaaccctaattcctatcacagtaatagaaacggaactatagcagctctatag-------ggtaggcacaattggtcgaactgcgttaac 33908636  T
Q  337 aaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||    
T  33908635 aaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagttgctgtt 33908569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 403
Target Start/End: Original strand, 1415485 - 1415678
Alignment:
Q  210 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 309  Q
    ||||| |||||||||||||||||   ||||||| | ||||||| ||||||||||||||  ||||||||||||||  ||||  ||||||| | | ||||||    
T  1415485 gaatcatagtagtactatatatacaacttgtaacattgaaaccctaattcttatcacaataatagaaacagaactatagctgctctataatcgtagaggt 1415584  T
Q  310 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtc-attctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    |  ||||||||| ||||||  ||||| || |||||||| || ||||||  |||||||||||||||||| |||||||||||||| ||||| |||||    
T  1415585 agccacaattggccgaactgcgttaacaagtatcgtgtatttattgtcttttctctttcgttctctta-ttaatcttttgttattagtttttgtt 1415678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 403
Target Start/End: Complemental strand, 9627307 - 9627132
Alignment:
Q  210 gaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggt 309  Q
    ||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||  |||||||||||||           ||||| |||     |    
T  9627307 gaatcgtagtagtactatatat--tgcttgtaacactgaaaccctaattcttatcacagtgatagaaacagaac-----------tatagctgc-----t 9627226  T
Q  310 aagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    |  |||||||||  |||||  ||||| ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||    
T  9627225 agacacaattggctgaactgggttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgttgtt 9627132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 403
Target Start/End: Complemental strand, 12155473 - 12155384
Alignment:
Q  312 gcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    |||||||| | |||||| |||||| |||||| |||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||    
T  12155473 gcacaatttgccgaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgttgtt 12155384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 12156016 - 12155952
Alignment:
Q  219 tagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaac 283  Q
    ||||||||||||||  | |||||| ||||||| | ||||||||||||||| ||||||||| ||||    
T  12156016 tagtactatatatacagtttgtaacactgaaatcctaattcttatcacagtaatagaaacggaac 12155952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 393
Target Start/End: Complemental strand, 7237249 - 7237068
Alignment:
Q  212 atcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaa 311  Q
    ||||||||||||||||||| |   ||||||| || |||||| ||||||||||||||| |||| |||  |||   ||||  ||||||||  |||||||||     
T  7237249 atcgtagtagtactatatacacaacttgtaacaccgaaaccctaattcttatcacagtaataaaaatggaattatagctgctctatagccgcagaggtag 7237150  T
Q  312 gcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttact 393  Q
     || |||||| ||||||  | ||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  7237149 acaaaattggccgaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatcttttgttact 7237068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 402
Target Start/End: Original strand, 41715034 - 41715209
Alignment:
Q  225 tatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattggtcg 324  Q
    |||||||||||||||||| |||||| || || |||| ||||||| ||||||||| ||||  |||   |||||| || | ||||||| |||||||||  ||    
T  41715034 tatatatattgcttgtaacactgaaccccta-ttctcatcacagtaatagaaacggaactatagatgctctatcgtcgtagaggtaggcacaattgtccg 41715132  T
Q  325 aactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgt 402  Q
    ||||   |||| ||  ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41715133 aactgcattaacaag-atcgtatgttaattgtctttctctttcgttctcttatttaatcttttgttactagttgttgt 41715209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 403
Target Start/End: Original strand, 38755682 - 38755789
Alignment:
Q  293 tctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttac 392  Q
    |||||| | ||||||||| |||||||||  | |||| | |||| |||||| ||||||||||   | ||||||||||||||||||||||||||||||||||    
T  38755682 tctataatcgcagaggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcat---ctttctctttcgttctcttatttaatcttttgttac 38755778  T
Q  393 tagttgttgtt 403  Q
    |||||||||||    
T  38755779 tagttgttgtt 38755789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 403
Target Start/End: Complemental strand, 865414 - 865235
Alignment:
Q  222 tactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattgg 321  Q
    |||||||||||||| | |||| | ||||||  |||||  |||||||  ||||||||| |||   |||| |||||||||| | |||| ||| ||||||||     
T  865414 tactatatatattgttcgtaatattgaaactctaatt--tatcacaacaatagaaacggaattatagctactctatagtcgtagagataaacacaattga 865317  T
Q  322 tcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgttgtt 403  Q
    |||||| | ||||| ||||||||||| |||||| || ||  |||||||||||||||||||| ||||||||||  ||||||||    
T  865316 tcgaaccacgttaacaaatatcgtgttttcattttcttttactttcgttctcttatttaattttttgttactgattgttgtt 865235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 28666876 - 28666938
Alignment:
Q  338 aatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttgtt 400  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28666876 aatatcgtgcgttcattgtctttctctttcgttctcttatttaatcttttgttactagttgtt 28666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 390
Target Start/End: Complemental strand, 6397826 - 6397661
Alignment:
Q  222 tactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaattgg 321  Q
    ||||||||||||||||||||| |||||||||||| |||  ||||||| |||||||||| |||  ||||  |||||||||  |||||||| |||||| |||    
T  6397826 tactatatatattgcttgtaacactgaaaccttagttc--atcacagtaatagaaacaaaactatagctgctctatagtcacagaggtaggcacaa-tgg 6397730  T
Q  322 tcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgtt 390  Q
     |||| |  ||||| |||||| || ||||| ||||  ||  |||| |||||||||||||||||| ||||    
T  6397729 ccgaagtgcgttaacaaatattgtatgttcgttgtgttttactttggttctcttatttaatcttatgtt 6397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 403
Target Start/End: Original strand, 7440792 - 7441000
Alignment:
Q  191 taatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagcc 290  Q
    ||||||||| |||||||||  || |||||| || ||||||||||| |||||| || |||||  ||||||  ||||||  |||| ||||| |||  || ||    
T  7440792 taatattgttaactgaatc--atagtagtaatattatatatattgtttgtaacaccgaaactctaattc--atcacaataataaaaacaaaactataacc 7440887  T
Q  291 actctatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgtt 390  Q
     ||||||||| ||||| ||||  | |||||| ||||||  ||||| ||||||||| | |  |||||  ||  ||||||||||||||||||||||| ||||    
T  7440888 gctctatagtcgcagaagtaaatataattggccgaactgcgttaacaaatatcgtatatatattgttttttactttcgttctcttatttaatcttatgtt 7440987  T
Q  391 actagttgttgtt 403  Q
    ||||| |||||||    
T  7440988 actagatgttgtt 7441000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 41941065 - 41941131
Alignment:
Q  191 taatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 259  Q
    ||||||||||||||||||||  | ||||||||| |||||||||| ||||||| | ||||||| ||||||    
T  41941065 taatattgtaaactgaatcg--tagtagtagtagtatatatattacttgtaacattgaaaccctaattc 41941131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 37259020 - 37259089
Alignment:
Q  188 ggataatattgtaaactgaatcgaatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 259  Q
    |||||||||||||| |||||||  || ||||| ||||||||||| ||| | |||||| ||||||||||||||    
T  37259020 ggataatattgtaagctgaatc--atagtagtggtactatatatgttgttggtaaaattgaaaccttaattc 37259089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 42517114 - 42517162
Alignment:
Q  211 aatcgtagtagtactatatatattgcttgtaaaactgaaaccttaattc 259  Q
    ||||||||||||||||||||||||| |||||| || |||||| ||||||    
T  42517114 aatcgtagtagtactatatatattgtttgtaacaccgaaaccctaattc 42517162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 41941221 - 41941257
Alignment:
Q  368 gttctcttatttaatcttttgttactagttgttgttt 404  Q
    |||||||||||||||||| |||||||||| |||||||    
T  41941221 gttctcttatttaatcttctgttactagtcgttgttt 41941257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 403
Target Start/End: Original strand, 8543100 - 8543200
Alignment:
Q  305 gaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctct-ttcgttctcttatttaatcttttgttacta-gttgttgt 402  Q
    |||||| |||||||||| ||||||  ||||| ||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||| || ||||||||    
T  8543100 gaggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatcttttgttaatatgttgttgt 8543199  T
Q  403 t 403  Q
    |    
T  8543200 t 8543200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 11630080 - 11630186
Alignment:
Q  295 tatagttgcagaggtaagcacaattggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatc-ttttgttact 393  Q
    |||||| | ||| ||| |||||||||| | |||| |||||| ||||||||| || |||||||| || ||||| |||||||||||||||| ||||||||||    
T  11630080 tatagtcgtagatgtatgcacaattggccaaactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctttttgttact 11630179  T
Q  394 agttgtt 400  Q
    |||||||    
T  11630180 agttgtt 11630186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 43361591 - 43361730
Alignment:
Q  218 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaa 317  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| ||||||  |||| ||||  |||   | |  || ||||||||||||||||   |  |    
T  43361591 gtagtactatatatattgcatgtaatactgaaaccttaattctcatcacattaatacaaacgaaactaaaactgctgtatagttgcagaggtagatatca 43361690  T
Q  318 ttggtcgaactatgttaataaatatcgtgtgttcattgtc 357  Q
    |||| | ||||| ||||| ||||||| |||||||||||||    
T  43361691 ttggccaaactacgttaacaaatatcatgtgttcattgtc 43361730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 8541441 - 8541515
Alignment:
Q  318 ttggtcgaactatgttaataaatatcgtgtgttcattgtcattctct-ttcgttctcttatttaatcttttgtta 391  Q
    |||| ||||||  ||||| ||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||    
T  8541441 ttggccgaactgcgttaacaaatatcgtgtgtgcgttgtctttctctcttcgttctcttatttaatcttttgtta 8541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 8540994 - 8541036
Alignment:
Q  210 gaatcgtagtagtactatatatattgcttgtaaaactgaaacc 252  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  8540994 gaatcgtagtagtactatatatacagcttgtaaaacagaaacc 8541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 24397 - 24574
Alignment:
Q  220 agtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaatagaaacagaaccgtagccactctatagttgcagaggtaagcacaatt 319  Q
    ||||||||| ||||||||||||| || |||||  ||| ||||||||| | ||||||||| ||||   |||  ||||||||| ||||||||| ||| ||||    
T  24397 agtactatagatattgcttgtaacaccgaaactctaagtcttatcactgtaatagaaacggaactacagctgctctatagtcgcagaggtaggcataatt 24496  T
Q  320 ggtcgaactatgttaataaatatcgtgtgttcattgtcattctctttcgttctcttatttaatcttttgttactagttg 398  Q
    || |||| ||  || |  || ||||||| ||||||||| ||  |||| |||||||||||||||||| |||||| |||||    
T  24497 ggccgaa-taactttaacaagatcgtgttttcattgtcttttacttttgttctcttatttaatcttctgttaccagttg 24574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 15077140 - 15077104
Alignment:
Q  363 ctttcgttctcttatttaatcttttgttactagttgt 399  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15077140 ctttcgttctcttatttaatctgttgttactagttgt 15077104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 43814493 - 43814455
Alignment:
Q  215 gtagtagtactatatatattgcttgtaaaactgaaacct 253  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  43814493 gtagtagtgctatatatattgcttgtaacactgaaacct 43814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 19338 - 19391
Alignment:
Q  218 gtagtactatatatattgcttgtaaaactgaaaccttaattcttatcacagaaata 273  Q
    |||||||||||||||||| |||||| | ||||||| ||||||  ||||||||||||    
T  19338 gtagtactatatatattgtttgtaacagtgaaaccctaattc--atcacagaaata 19391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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