View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_high_17 (Length: 416)

Name: NF14439_high_17
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_high_17
NF14439_high_17
[»] chr6 (2 HSPs)
chr6 (262-401)||(34988814-34988953)
chr6 (311-400)||(35042425-35042514)
[»] chr2 (1 HSPs)
chr2 (169-250)||(37488266-37488347)
[»] chr4 (2 HSPs)
chr4 (313-398)||(15559699-15559784)
chr4 (313-398)||(15560151-15560236)
[»] chr7 (1 HSPs)
chr7 (19-71)||(11766732-11766784)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 262 - 401
Target Start/End: Original strand, 34988814 - 34988953
Alignment:
Q  262 tatacatacatataccatgatattggcttgtgtcacatcacttagatatgctaggacaagttccatgctttgccaccattcatgttgaatttcttgagcc 361  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  34988814 tatatatatatataccatgatattggcttgtgtcacagcacttagatatgctaggacaagttccatgctttgccaccattcatattgaatttcttgagca 34988913  T
Q  362 tcccaaagaacatgaccaaaataaggataaacttcccttt 401  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  34988914 tcccaaagaacattaccaaaataaggataaacttcccttt 34988953  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 35042425 - 35042514
Alignment:
Q  311 gctaggacaagttccatgctttgccaccattcatgttgaatttcttgagcctcccaaagaacatgaccaaaataaggataaacttccctt 400  Q
    ||||||||| || |||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||| ||||||||    
T  35042425 gctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctcccaaagaacattaccaagataagaataagcttccctt 35042514  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 37488266 - 37488347
Alignment:
Q  169 ttgattctttgttagtttgattccaaaaccgtgaatcttttattaaaacaaagtagaatagagttaatgcaacactacgacc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37488266 ttgattctttgttagtttgattccaaaaccgtgaatcttttattaaaacaaagtagaatagagttaatgcaacactacgacc 37488347  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 15559699 - 15559784
Alignment:
Q  313 taggacaagttccatgctttgccaccattcatgttgaatttcttgagcctcccaaagaacatgaccaaaataaggataaacttccc 398  Q
    ||||||| || ||| |||||||| || ||||| |||||| |||||||||||||||||||||| ||||| ||||||||| |||||||    
T  15559699 taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctcccaaagaacataaccaatataaggatacacttccc 15559784  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 398
Target Start/End: Complemental strand, 15560236 - 15560151
Alignment:
Q  313 taggacaagttccatgctttgccaccattcatgttgaatttcttgagcctcccaaagaacatgaccaaaataaggataaacttccc 398  Q
    ||||||| || ||| |||||||| || ||||| |||||| |||||||||| ||||||||||| ||||| ||||||||| |||||||    
T  15560236 taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctaccaaagaacataaccaatataaggatacacttccc 15560151  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 11766732 - 11766784
Alignment:
Q  19 atgtttctcatttgtgtttatgtaattgttacaggtttcaatttacaattgca 71  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  11766732 atgtttctcatttgtgtttaagcaattgttacaggtttcgatttacaattgca 11766784  T

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