View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14439_high_19 (Length: 392)
Name: NF14439_high_19
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_19 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 12088435 - 12088802
Alignment:
| Q |
16 |
gtcagcacactatgtgaagagttcatggaatataaagagtttgttagagactttggtttaggtaggagaagtgaacgtaatgttttgtggaatattttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12088435 |
gtcagcacactatgtgaagagttcatggaatataaagagtttgttagagactttggtttaggtaggagaagtgaacgtaatgttttgtggaatattttgt |
12088534 |
T |
|
| Q |
116 |
tgctttcttgtgctgataattttaagatgaagagtttgctaggatggttgaattaggttttcgtgcgggtgttataaaaattaatattcgcgctttggag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
12088535 |
tgctttcttgtgctgataattttaagatgaagagtttgctaggatggttgaattaggttttcgtgcaggtgttacaaagattaatattcgcgctttggag |
12088634 |
T |
|
| Q |
216 |
ttttcgaggatgacgttattttaagatcttcatcttagtgttgaacatatgaggagtgaaaaggttgttcctgatttggttacttattgttgtgttgtgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12088635 |
ttttcgaggatgacgttattttaagatctttatcttagtgttgagcatatgaggagtgaaaaggttgttcctgatttgcttacttattgttgtgttgtgg |
12088734 |
T |
|
| Q |
316 |
atgcttacttagatagaaaatatggaaggaattttgagtttgttttgaataaaatggatgttgatgat |
383 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12088735 |
atgcttactcagatattaaatatggaaggaattttgagtttgttttgaataaaatggatgttgatgat |
12088802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 52 - 383
Target Start/End: Original strand, 19999503 - 19999847
Alignment:
| Q |
52 |
gagtttgttagagactttggtttaggtaggagaagtgaacgtaatgttttgtggaatattttgttgctttcttgtgctgataattttaagatgaagagtt |
151 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || | | ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
19999503 |
gagtttgttagagatgttggtttaggtaggagaaatgtagggaatgttttgtggaatcttttgttgctttcttatgctgctaattttaagatgaagagct |
19999602 |
T |
|
| Q |
152 |
tgc-------------taggatggttgaattaggttttcgtgcgggtgttataaaaattaatattcgcgctttggagttttcgaggatgacgttatttta |
238 |
Q |
| |
|
||| |||||||||||||| |||||||||| ||| ||||| | |||||||| | ||| ||| ||||||||||||| || | |||| |
|
|
| T |
19999603 |
tgcagagagagtttgttaggatggttgaatcaggttttcgtccggatgttacgacgtttaatattagggctatggcgttttcgaggatggcgctgttttg |
19999702 |
T |
|
| Q |
239 |
agatcttcatcttagtgttgaacatatgaggagtgaaaaggttgttcctgatttggttacttattgttgtgttgtggatgcttacttagatagaaaatat |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| | |
|
|
| T |
19999703 |
ggatcttcatcttagtattgaacatatgaggagtgaaaatgttgttcctgatttggttacttatggttgtgttgtggaggcttacttggatagaaagctt |
19999802 |
T |
|
| Q |
339 |
ggaaggaattttgagtttgttttgaataaaatggatgttgatgat |
383 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
19999803 |
ggaaggaatttggagtttgttttgaataaaatggatgtggatgat |
19999847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 53 - 383
Target Start/End: Original strand, 28824333 - 28824675
Alignment:
| Q |
53 |
agtttgttagagactttggtttaggtaggagaagtgaacgtaatgttttgtggaatattttgttgctttcttgtgctgataattttaagatgaagagttt |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || | | ||| ||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
28824333 |
agtttgttagagatgttggtttaggtaggagaaatgtagggaatcttttgtggaatcttttgttgctttcttattctgctaattttaagatgaagagttt |
28824432 |
T |
|
| Q |
153 |
gc-------------taggatggttgaattaggttttcgtgcgggtgttataaaaattaatattcgcgctttggagttttcgaggatgacgttattttaa |
239 |
Q |
| |
|
|| ||| |||||||||||||| |||||| | | ||||| | ||||||| |||||||||| ||||||||||||| |||| |||| |
|
|
| T |
28824433 |
gcagagagagtttgttagaatggttgaattagggtttcgtcctgatgttacgacgtttaatatccgcgctttggcgttttcgaggatggcgttgttttgg |
28824532 |
T |
|
| Q |
240 |
gatcttcatcttagtgttgaacatatgaggagtgaaaaggttgttcctgatttggttacttattgttgtgttgtggatgcttacttagatagaaaatatg |
339 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
28824533 |
gatcttcatcttagtattga-catatgagaagtgagaaggttgtttctgatttggttacttatggttgtgttgtcgatgcttacttggatagaaggcatg |
28824631 |
T |
|
| Q |
340 |
gaaggaattttgagtttgttttgaataaaatggatgttgatgat |
383 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
28824632 |
gaaggaatttggagtttgttttgaataaaatggatgtggatgat |
28824675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 52 - 383
Target Start/End: Complemental strand, 344719 - 344375
Alignment:
| Q |
52 |
gagtttgttagagactttggtttaggtaggagaagtgaacgtaatgttttgtggaatattttgttgctttcttgtgctgataattttaagatgaagagtt |
151 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || | ||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
344719 |
gagtttgttagagatgttggtttaggtaggagaaatgttgggaatgttttgtggaatcttttattgctttcttatgctgctaattttaagatgaagagct |
344620 |
T |
|
| Q |
152 |
tgc-------------taggatggttgaattaggttttcgtgcgggtgttataaaaattaatattcgcgctttggagttttcgaggatgacgttatttta |
238 |
Q |
| |
|
||| |||||||||||||| ||| |||||| ||| ||||| | |||||||| | ||| ||| ||||||||||||| || | |||| |
|
|
| T |
344619 |
tgcagagagagtttgttaggatggttgaatcagggtttcgtccggatgttacgacttttaatattagggctatggcgttttcgaggatggcgctgttttg |
344520 |
T |
|
| Q |
239 |
agatcttcatcttagtgttgaacatatgaggagtgaaaaggttgttcctgatttggttacttattgttgtgttgtggatgcttacttagatagaaaatat |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||| | |
|
|
| T |
344519 |
ggatcttcatcttagtattgaacatatgaggagtgaaaaggttgttcctgatttggttacttacggttgtgttgtggaggcatacttggatagaaggctt |
344420 |
T |
|
| Q |
339 |
ggaaggaattttgagtttgttttgaataaaatggatgttgatgat |
383 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
344419 |
ggaaggaatttggagtttgttttgaataaaatggatgtggatgat |
344375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University