View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_high_28 (Length: 349)
Name: NF14439_high_28
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 158 - 337
Target Start/End: Complemental strand, 42626274 - 42626095
Alignment:
| Q |
158 |
ctaacctttccatgttcgcagaccaaccaaattttcctgacaccaggacacaaggcgaagagctcagtcggtttgaaatctgcacacttgcaactttatc |
257 |
Q |
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| T |
42626274 |
ctaacctttccatgttcgcagaccaaccaaattttcctgacaccaggacacaaggcgaagagctcagtcggtttgaaatctgcacacttgcaactttatc |
42626175 |
T |
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| Q |
258 |
acccaaacgtttcttaatccagtcaattgtcgaactaaactcctgcttcatttccttttccttttcctcattcttctcac |
337 |
Q |
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| T |
42626174 |
gcccaaacgtttcttaatccagtcaattgttgaactgaactcctgcttcatttccttttccttttcctcattcttatcac |
42626095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 42626409 - 42626323
Alignment:
| Q |
23 |
agcgggatcacccatagtttgtgccttcattagcctgcagcagcaaatttgatttaaacacagcagtgtcactttcattttcgaaag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42626409 |
agcgggatcacccatagtttgtgccttcattagcctgcagcagcaaatttgatttaaacacagcagtgtcactttcattttcgaaag |
42626323 |
T |
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