View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_high_31 (Length: 310)
Name: NF14439_high_31
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 25093250 - 25092955
Alignment:
| Q |
1 |
gaatcaaagttgccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgcaaaa |
100 |
Q |
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| T |
25093250 |
gaatcaaagttgccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgcaaaa |
25093151 |
T |
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| Q |
101 |
ccaattgaactgttgaattataagcaagtctataaagccttgtcccttttgtagttgcaagatttgtaacttgtgaccctgtaaagttataaaccacagg |
200 |
Q |
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| T |
25093150 |
ccaattgaactgttgaattataagcaagtctataaagccttgtcccttttgtagttgcaagatttgtaacttgtgaccctgtaaagttataaaccacagg |
25093051 |
T |
|
| Q |
201 |
aggatttccaggaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacattgtt |
296 |
Q |
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| T |
25093050 |
aggatttccaggaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacattgtt |
25092955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 29554612 - 29554476
Alignment:
| Q |
13 |
ccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgcaaaaccaattgaactg |
112 |
Q |
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||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||| |
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| T |
29554612 |
ccttgtcccttaccaactacaaagaaattgaatccatgtagatgaataggatgattctcaggagctatcattccagtatcttgcaaaattaattgaactg |
29554513 |
T |
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| Q |
113 |
ttgaattataagcaagtctataaagccttgtcccttt |
149 |
Q |
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| T |
29554512 |
ttgaattataagcaagtctataaaccctagtcccttt |
29554476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 29554417 - 29554329
Alignment:
| Q |
205 |
tttccaggaaaatcatcagtaaaaactcctttaatcttgaagaaatgtgcttgaagaagcgcgattttcggcatcacaaatgtaacatt |
293 |
Q |
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|||| |||||||||||||||||||| ||| |||| || || ||||||||||||||||| | ||||| ||||| |||||||| ||||| |
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| T |
29554417 |
tttctaggaaaatcatcagtaaaaattccactaatgttaaaaaaatgtgcttgaagaagtgaaattttaggcatgacaaatgttacatt |
29554329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 35991138 - 35991204
Alignment:
| Q |
35 |
agaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgcaaaac |
101 |
Q |
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| T |
35991138 |
agaaatcatatccatgaagatgaatagggtgattctcaggagtaacaatactagtatcttgcaaaac |
35991204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 4384424 - 4384349
Alignment:
| Q |
22 |
ctaccaactacaaagaaattaaatccatgaagatgaataggatgattctcaggtgttaacattccagtatcttgca |
97 |
Q |
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| T |
4384424 |
ctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctcaggtgcaatgattccagtatcttgca |
4384349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 24068980 - 24069029
Alignment:
| Q |
24 |
accaactacaaagaaattaaatccatgaagatgaataggatgattctcag |
73 |
Q |
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|||||| |||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
24068980 |
accaacaacaaagaaattaaatccatgaagatgcaaaggatgactctcag |
24069029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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