View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_high_34 (Length: 302)
Name: NF14439_high_34
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_34 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 54290521 - 54290794
Alignment:
| Q |
13 |
aatattgtgcgtgttaacaaatcttctacataaacaaactaaattattttttcaaaaccatcatttcatcaacttgttctgctacaatttcgtatctaaa |
112 |
Q |
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| T |
54290521 |
aatattgtgcgtgttaacaaatcttctgcataaacaaactaaattattttttcaaaaccatcatttcatcaacatgttctgctacaatttcgtatctaaa |
54290620 |
T |
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| Q |
113 |
tttaactctcatcttgaccaaccatctctactcttaaacttggctgaacccctaataaagaagttctatattttctttctggcgaaaggtttgagaataa |
212 |
Q |
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| T |
54290621 |
tttaactctcatcttgaccaaccatctctactcttatacttggctgaacccctaataaagaagttctatattttctttctggcaaaaggtttgagaataa |
54290720 |
T |
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| Q |
213 |
agtgaaattagattggtcaaatccatttaaacacgatgcctattttcctatttttggtcatggtagccttaatg |
286 |
Q |
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| T |
54290721 |
agtcaaattagattggtcaaatccatttacacacgatgcctattttcctatttttggtcatggtagccttaatg |
54290794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 37895147 - 37895189
Alignment:
| Q |
199 |
aggtttgagaataaagtgaaattagattggtcaaatccattta |
241 |
Q |
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| T |
37895147 |
aggtttgtgaataaagtcaaattagattggttaaatccattta |
37895189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 15632114 - 15632067
Alignment:
| Q |
181 |
tattttctttctggcgaaaggtttgagaataaagtgaaattagattgg |
228 |
Q |
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| T |
15632114 |
tattttctttctggtgaaaggtttgagagtagagttaaattagattgg |
15632067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 42445610 - 42445676
Alignment:
| Q |
172 |
gaagttctatattttctttctggcgaaaggtttgagaataaagtgaaattagattggtcaaatccat |
238 |
Q |
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| T |
42445610 |
gaagttttatattttctttctggtcagaggttcgagaataaggtcaaattagattactcaaatccat |
42445676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 17017 - 16960
Alignment:
| Q |
181 |
tattttctttctggcgaaaggtttgagaataaagtgaaattagattggtcaaatccat |
238 |
Q |
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| T |
17017 |
tattctctttctggtgagaggtttgagaataaggtcaaattagatttctcaaatccat |
16960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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