View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_high_41 (Length: 268)

Name: NF14439_high_41
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_high_41
NF14439_high_41
[»] chr2 (3 HSPs)
chr2 (13-210)||(9834520-9834717)
chr2 (216-251)||(9834711-9834746)
chr2 (178-227)||(18777160-18777209)
[»] chr1 (5 HSPs)
chr1 (44-243)||(3461110-3461309)
chr1 (170-226)||(28214411-28214467)
chr1 (179-227)||(26418922-26418970)
chr1 (179-227)||(32108310-32108358)
chr1 (199-227)||(40454742-40454770)
[»] chr3 (4 HSPs)
chr3 (169-242)||(21793923-21793996)
chr3 (192-226)||(29704534-29704568)
chr3 (179-227)||(8968521-8968569)
chr3 (179-227)||(9734585-9734633)
[»] chr5 (3 HSPs)
chr5 (192-253)||(14945192-14945253)
chr5 (186-253)||(27200605-27200672)
chr5 (49-125)||(14945093-14945169)
[»] chr8 (5 HSPs)
chr8 (80-243)||(11107782-11107945)
chr8 (192-226)||(39533586-39533620)
chr8 (179-227)||(7995069-7995117)
chr8 (36-212)||(11248103-11248279)
chr8 (182-226)||(12784231-12784275)
[»] chr6 (4 HSPs)
chr6 (44-174)||(9050813-9050942)
chr6 (153-242)||(30147889-30147978)
chr6 (170-226)||(18748487-18748543)
chr6 (179-227)||(15950684-15950732)
[»] chr7 (3 HSPs)
chr7 (179-227)||(665124-665172)
chr7 (179-227)||(15455689-15455737)
chr7 (179-227)||(33972968-33973016)
[»] chr4 (5 HSPs)
chr4 (179-227)||(15065789-15065837)
chr4 (179-227)||(17459284-17459332)
chr4 (179-227)||(20089192-20089240)
chr4 (179-227)||(25553133-25553181)
chr4 (179-227)||(47782875-47782923)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 9834520 - 9834717
Alignment:
Q  13 aatatgggagctaagtaaagacgtggatgcatttgttaattcgtggacaacctcgttcgcttgttttctagtaaacccaacacgagagtttgttaaataa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9834520 aatacgggagctaagtaaagacgtggatgcatttgttaattcgtggacaacctcgttcgcttgtcttctagtaaacccaacacgagagtttgttaaataa 9834619  T
Q  113 agagaacaataatatatgttaatgtccatgataatgtcatattcggtgatgtcgtcattgcttcgattgaaatagtcaactactcgtttcgaatcaac 210  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9834620 agagaacaataatatatgttaatgtccatgataatgccatattcggtgatgtcgtcattgcttcgattgaaatagtcaactactcgtttcgaatcaac 9834717  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 9834711 - 9834746
Alignment:
Q  216 aatcaacatttggtagccgtaaatcatgtttccact 251  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9834711 aatcaacatttggtagccgtaaatcatgtatccact 9834746  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 18777209 - 18777160
Alignment:
Q  178 attgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    ||||||||| ||| |||||  ||||||||||||||| |||||||||||||    
T  18777209 attgaaataatcagctacttttttcgaatcaacctcgaaatcaacatttg 18777160  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 3461309 - 3461110
Alignment:
Q  44 tttgttaattcgtggacaacctcgttcgcttgttttctagtaaacccaacacgagagtttgttaaataaagagaacaataatatatgttaatgtccatga 143  Q
    |||| ||||| ||||| || ||| || | |||| ||||||||||| || || ||||||||||||||||||||||| |||||| ||||||  ||||||| |    
T  3461309 tttgctaatttgtggataatctcatttgattgtcttctagtaaactcatcatgagagtttgttaaataaagagaataataatgtatgttgttgtccataa 3461210  T
Q  144 taatgtcatattcggtgatgtcgtcattgcttcgattgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcatg 243  Q
    |||   || ||||  |||||| ||||||||||| ||||||||| ||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  3461209 taacaccaaattcattgatgttgtcattgcttccattgaaataatcagctactcgttttgaattaacctcaaaatcaatatttggtagccgtaaatcatg 3461110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 28214411 - 28214467
Alignment:
Q  170 ttgcttcgattgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacattt 226  Q
    |||||||| || ||||| ||  |||| ||||||||||||||||||||||||||||||    
T  28214411 ttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattt 28214467  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 26418922 - 26418970
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  26418922 ttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttg 26418970  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 32108358 - 32108310
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  32108358 ttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttg 32108310  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 40454742 - 40454770
Alignment:
Q  199 tttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||||||||||||||||||||||||    
T  40454742 tttcgaatcaacctcaaaatcaacatttg 40454770  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 21793996 - 21793923
Alignment:
Q  169 attgcttcgattgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcat 242  Q
    |||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  21793996 attgctccgattaaaataatcaactacttgtttcgagtcaacctcaaaatcaacatttggtagccataaatcat 21793923  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 29704568 - 29704534
Alignment:
Q  192 ctactcgtttcgaatcaacctcaaaatcaacattt 226  Q
    |||| ||||||||||||||||||||||||||||||    
T  29704568 ctacacgtttcgaatcaacctcaaaatcaacattt 29704534  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 8968521 - 8968569
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||||||| |||||| ||| || |||||||| |||||||||||||    
T  8968521 ttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttg 8968569  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 9734585 - 9734633
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||||||| |||||| ||| || |||||||| |||||||||||||    
T  9734585 ttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttg 9734633  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 14945192 - 14945253
Alignment:
Q  192 ctactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcatgtttccactga 253  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  14945192 ctacttgtttcgaatcaacttcaaaatcaacatttggtagtcgtaaatcatgtatccactga 14945253  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 27200605 - 27200672
Alignment:
Q  186 agtcaactactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcatgtttccactga 253  Q
    ||||||||||   ||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||    
T  27200605 agtcaactacctttttcgaatcaatctcaaaatcaacatttgttagccgtaaatcatgaatccactga 27200672  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 14945093 - 14945169
Alignment:
Q  49 taattcgtggacaacctcgttcgcttgttttctagtaaacccaacacgagagtttgttaaataaagagaacaataat 125  Q
    |||||| ||||||||||| ||||  ||||||| ||||||| |||| | ||| |||||||||||||| ||||||||||    
T  14945093 taattcatggacaacctcattcgtctgttttcaagtaaactcaactcaagaatttgttaaataaagggaacaataat 14945169  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 11107782 - 11107945
Alignment:
Q  80 ctagtaaacccaacacgagagtttgttaaataaagagaacaataatatatgttaatgtccatgataatgtcatattcggtgatgtcgtcattgcttcgat 179  Q
    |||| |||| ||||||||||||||| |||| ||||||||||||| |   | ||| | ||||| || ||  || |||| ||||  ||  |||||| | | |    
T  11107782 ctagaaaactcaacacgagagtttggtaaaaaaagagaacaatagtgcctattactatccataatgatcccaaattctgtgacatcaccattgccttggt 11107881  T
Q  180 tgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcatg 243  Q
    ||||||||||| |||| || |||||||| |||||||||||||||||| | ||| |||| |||||    
T  11107882 tgaaatagtcagctacgcgcttcgaatctacctcaaaatcaacattttgaagctgtaactcatg 11107945  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 39533620 - 39533586
Alignment:
Q  192 ctactcgtttcgaatcaacctcaaaatcaacattt 226  Q
    |||| ||||||||||||||||||||||||||||||    
T  39533620 ctacacgtttcgaatcaacctcaaaatcaacattt 39533586  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 7995117 - 7995069
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||| |||||||||||||| ||||||||| ||||    
T  7995117 ttgaaataatcagctactcttttcgaatcaacctaaaaatcaacgtttg 7995069  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 11248279 - 11248103
Alignment:
Q  36 tggatgcatttgttaattcgtggacaacctcgttcgcttgttttctagtaaacccaacacgagagtttgttaaataaagagaacaataatatatgttaat 135  Q
    ||||||| |||| |||||| ||   |||||| |||| || | |||| |||||| ||||| ||||||||  ||||||||||  | |||| | ||||||| |    
T  11248279 tggatgcctttgctaattcatgtgtaacctcattcgtttttcttctggtaaactcaacatgagagtttcctaaataaagattataatattgtatgttact 11248180  T
Q  136 gtccatgataatgtcatattcggtgatgtcgtcattgcttcgattgaaatagtcaactactcgtttcgaatcaacct 212  Q
     ||||| || | |  ||||||  |||| |||||||| | ||| ||||| |||| | |||||| ||||||||||||||    
T  11248179 atccataatgacgctatattcaatgatatcgtcattacctcgcttgaactagttagctactcttttcgaatcaacct 11248103  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 12784231 - 12784275
Alignment:
Q  182 aaatagtcaactactcgtttcgaatcaacctcaaaatcaacattt 226  Q
    ||||| ||| |||||| ||||||||||||||||||| ||||||||    
T  12784231 aaataatcagctactcttttcgaatcaacctcaaaagcaacattt 12784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 9050813 - 9050942
Alignment:
Q  44 tttgttaattcgtggacaacctcgttcgcttgttttctagtaaacccaacacgagagtttgttaaataaagagaacaataatatatgttaatgtccatga 143  Q
    |||||||||||||||||||||||  ||| ||| ||  ||||||||  || | |||||||| || |||||||||||||||| | ||||| | | ||||| |    
T  9050813 tttgttaattcgtggacaacctcagtcgtttgcttcatagtaaacttaataggagagtttatt-aataaagagaacaatagtgtatgtgactatccataa 9050911  T
Q  144 taatgtcatattcggtgatgtcgtcattgct 174  Q
    |||   || ||||| ||||||||||||||||    
T  9050912 taacaccaaattcgatgatgtcgtcattgct 9050942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 30147978 - 30147889
Alignment:
Q  153 attcggtgatgtcgtcattgcttcgattgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttggtagccgtaaatcat 242  Q
    |||||||||| || || ||||  ||||| || |||||| | ||||| ||||||||||| |||||||| |||||||| |||||||| ||||    
T  30147978 attcggtgatatcttcgttgccccgattaaagtagtcagccactcgcttcgaatcaacttcaaaatccacatttggaagccgtaattcat 30147889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 18748543 - 18748487
Alignment:
Q  170 ttgcttcgattgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacattt 226  Q
    |||||||| || ||||| ||  |||| ||||||||||||||||||||||||||||||    
T  18748543 ttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattt 18748487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 15950732 - 15950684
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  15950732 ttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttg 15950684  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 665124 - 665172
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||| ||| |||||||||||||||||||| ||||    
T  665124 ttgaaataatcagctactctttttgaatcaacctcaaaatcaacgtttg 665172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 15455737 - 15455689
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  15455737 ttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttg 15455689  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 33973016 - 33972968
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||||||| || |||||||| |||||||||||||    
T  33973016 ttgaaataatcagctactcgttttgagtcaacctcgaaatcaacatttg 33972968  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 15065837 - 15065789
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| |||||||||| ||| || ||||| ||||||||||||||||    
T  15065837 ttgaaataatcaactactcttttagagtcaacttcaaaatcaacatttg 15065789  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 17459332 - 17459284
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| |||||||||| ||| || |||||||| |||||||||||||    
T  17459332 ttgaaataatcaactactcttttagagtcaacctcgaaatcaacatttg 17459284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 20089192 - 20089240
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    ||||||||||||  ||||| ||| || ||||||||||||||||||||||    
T  20089192 ttgaaatagtcagttactctttttgagtcaacctcaaaatcaacatttg 20089240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 25553181 - 25553133
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||||||| |||||| ||| || |||||||| |||||||||||||    
T  25553181 ttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatttg 25553133  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 47782923 - 47782875
Alignment:
Q  179 ttgaaatagtcaactactcgtttcgaatcaacctcaaaatcaacatttg 227  Q
    |||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  47782923 ttgaaataatcagctactgttttcgaatctacctcaaaatcaacatttg 47782875  T

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