View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_high_8 (Length: 495)
Name: NF14439_high_8
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 4276296 - 4276750
Alignment:
| Q |
1 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276296 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
4276395 |
T |
|
| Q |
101 |
gagtcttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaaccaacaatgaagtcatttca |
200 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276396 |
gagtgttaaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaaccaacaatgaagtcatttca |
4276495 |
T |
|
| Q |
201 |
aaacataacctcctgtatattcctcgtttcattgcaattcattttcatagaattctctttccataatttatttatatcaccatcacagtcccaaacccat |
300 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276496 |
aaacataacc----------tcctcatttcattgcaattcattttcatagaattctctttccataatttatttatatcaccatcacagtcccaaacccat |
4276585 |
T |
|
| Q |
301 |
aactctcaaaccaattttgttttgtttttcgaaaaacaaatgtcgcatggtttaataaactcatctttcatttgaggaatgctatcaaagtgcaaacgca |
400 |
Q |
| |
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||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||| ||| |
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| T |
4276586 |
aacactcaagccaattttgttttgtttttcgaaaaacaaatgttgcattgtttaataaattcacctttcatttgaggaatgctatccccctgc------- |
4276678 |
T |
|
| Q |
401 |
taacacaattctgctccactttgtgtcgtgtttataaagaatttgctacactagcaattgtagggaagaaaattgat |
477 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276679 |
-----caattctgctccactttgtgtcgtgtttataaagaatttgctacactagcaattgtagggaagaaaattgat |
4276750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 176 - 477
Target Start/End: Original strand, 4233755 - 4234056
Alignment:
| Q |
176 |
ttaaaccaacaatgaagtcatttcaaaacataacctcctgtatattcctcgtttcattgcaattcattttcatagaattctctttccataatttatttat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
4233755 |
ttaaaccaacaatgaagtcatttcaaaacataacctcatgtatattcctcatttcattgcaattcattttcatagaattctctttccattatttatttat |
4233854 |
T |
|
| Q |
276 |
atcaccatcacagtcccaaacccataactctcaaaccaattttgttttgtttttcgaaaaacaaatgtcgcatggtttaataaactcatctttcatttga |
375 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4233855 |
atcaccatcacagttccaaacccataactctcaaaccaattttgttttgtttttcgaaaaacaaatgtcgcatggtttaataaactcatctttcatttga |
4233954 |
T |
|
| Q |
376 |
ggaatgctatcaaagtgcaaacgcataacacaattctgctccactttgtgtcgtgtttataaagaatttgctacactagcaattgtagggaagaaaattg |
475 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4233955 |
ggaatgctatcaaagtgcaaatgcataacacaattctgctccactttgtgtcgtgtttataaagaatttgctacactagcaattgtaggaaagaaaattg |
4234054 |
T |
|
| Q |
476 |
at |
477 |
Q |
| |
|
|| |
|
|
| T |
4234055 |
at |
4234056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2811620 - 2811800
Alignment:
| Q |
1 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2811620 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
2811719 |
T |
|
| Q |
101 |
gagtcttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaac |
181 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2811720 |
gagtgttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaac |
2811800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 176 - 386
Target Start/End: Original strand, 38008799 - 38009017
Alignment:
| Q |
176 |
ttaaaccaacaatgaagtcatttcaaaacataacctcctgtatattcctcgtttcattgcaattcattttcatagaattctctttccataatttatt--- |
272 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
38008799 |
ttaaaccaacaatgaagctatttcaaaacataacctcctatatattcctcatttcattgcaattcattttcatagaattctctttccgtaatttttttga |
38008898 |
T |
|
| Q |
273 |
tatatcaccatcacagtcccaaacccataactctcaaaccaattttgttttgtttttcgaaaaac-----aaatgtcgcatggtttaataaactcatctt |
367 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||| |
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|
| T |
38008899 |
tatatcaccgtcatagtcccaaacccataactctcaagccaattttgttttgtttttctaaaaacaaatgaaatgtcgcatggtgtaataaaccaatctt |
38008998 |
T |
|
| Q |
368 |
tcatttgaggaatgctatc |
386 |
Q |
| |
|
|||||| ||| |||||||| |
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|
| T |
38008999 |
tcatttcagggatgctatc |
38009017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 38009089 - 38009162
Alignment:
| Q |
402 |
aacacaattctgctccactttgtgtcgt-gtttataaagaatttgctacactagcaattgtagggaagaaaatt |
474 |
Q |
| |
|
|||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38009089 |
aacataattctgctccactttgtgtcattgtttataaagaatttgctacactagcaattgtagggaagaaaatt |
38009162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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