View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_10 (Length: 466)
Name: NF14439_low_10
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 122 - 449
Target Start/End: Original strand, 40735646 - 40735976
Alignment:
| Q |
122 |
ataatataattcataattctttttgttcaaattcatttcctataccaaagacatttagccgatatcagcttaagtgcatcaacagccgagttccaaattc |
221 |
Q |
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| T |
40735646 |
ataatataattcataattctttttgttcaaattcatttcctataccaaagacatttagccgatatcagcttaagtgcatcaacagccgagttccaaattc |
40735745 |
T |
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| Q |
222 |
acgattcattttaacaaataaaccaaaattataaaggtaattaacttccattgatcctaatacaagtggtagataatcgagtctcttgactatttgatgc |
321 |
Q |
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| T |
40735746 |
acgattcattttaacaaataaaccaaaattataaaggtaattaacttccattgatcctaatacaagtggtagataatcgagtctcttgactatttgatgc |
40735845 |
T |
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| Q |
322 |
catctcaaaatgtgaacacgaaatgccgcctcattttggcattggacaacatcataacatacaacattcgtaaaataaataacaagtag---nnnnnnng |
418 |
Q |
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| T |
40735846 |
catctcaaaatgtgaacacgaaatgccgcctcattttgggattggacaacatcataacatacaacattcgtaaaataaataacaagtagttttttttttg |
40735945 |
T |
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| Q |
419 |
aagcaaaataacaagtagtttcggatcctat |
449 |
Q |
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| T |
40735946 |
aagcaaaataacaagtagtttcggatcctat |
40735976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 40735332 - 40735461
Alignment:
| Q |
1 |
taggaccaatatatgataaattggtcgagttaaaattttcccgagtttgactcatcactatatcaaaggttagtatttagtaatatatagatttaagtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40735332 |
taggaccaatatatgataaattggtcgagttaaaattttcccgagtttgactcatcactatatcaaaggttagtatttagtaatatatagatttaagtca |
40735431 |
T |
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| Q |
101 |
aaatagatggatttcttattaataatataa |
130 |
Q |
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| T |
40735432 |
aaatagatggatttcttattaataatataa |
40735461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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