View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_13 (Length: 440)
Name: NF14439_low_13
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 92 - 432
Target Start/End: Complemental strand, 2571669 - 2571329
Alignment:
| Q |
92 |
gacagttaaaaggttgtgcaaaattttgagttttgcattcccgaatatgtgtttgaaacgtgttagcaagaccgnnnnnnnaatacaacactggcttttt |
191 |
Q |
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| T |
2571669 |
gacagttaaaaggttgtgcaaaattttgagttttgcattcccgaatatgtgtttgaaacgtgttagcaagaccgtttttttaatacaacactggcttttt |
2571570 |
T |
|
| Q |
192 |
tattttgtaactatactattgtttattgaatacaaattatatataatcggactgtacaattttcttagctatgtacttccccaaataatcatatccatga |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571569 |
tattttgtaactatactattgtttattgaatacaaattatatataatcggactgtacaattttcttagctatgtacttccccaaataatcatatccatga |
2571470 |
T |
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| Q |
292 |
aagtacagggcttcaatttcagctctcctgccgctctcaaccatcaaagtgacctcttccttgtaattctcctgttaagcaccatttagttaatttatgg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571469 |
aagtacagggcttcaatttcagctctcctgccgctctcaaccatcaaagtgacctcttccttgtaattctcctgttaagcaccatttagttaatttatgg |
2571370 |
T |
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| Q |
392 |
aaaaacactcttcagttgaagaaaatattcagaaagtataa |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571369 |
aaaaacactcttcagttgaagaaaatattcagaaagtataa |
2571329 |
T |
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