View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14439_low_15 (Length: 418)

Name: NF14439_low_15
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14439_low_15
NF14439_low_15
[»] chr3 (25 HSPs)
chr3 (1-399)||(47249439-47249836)
chr3 (273-390)||(47242881-47242998)
chr3 (285-378)||(47254150-47254243)
chr3 (27-101)||(21367685-21367759)
chr3 (150-222)||(35959585-35959657)
chr3 (27-101)||(34610784-34610858)
chr3 (27-101)||(37389201-37389275)
chr3 (35-86)||(3194250-3194301)
chr3 (145-220)||(44747516-44747591)
chr3 (45-104)||(31403373-31403432)
chr3 (54-101)||(33883755-33883802)
chr3 (283-330)||(47265980-47266027)
chr3 (34-100)||(402527-402593)
chr3 (19-101)||(2719486-2719568)
chr3 (137-199)||(28240228-28240290)
chr3 (19-101)||(38902084-38902166)
chr3 (46-100)||(46031009-46031063)
chr3 (148-197)||(12704123-12704172)
chr3 (167-220)||(30956772-30956825)
chr3 (167-220)||(30972584-30972637)
chr3 (27-100)||(46778169-46778241)
chr3 (166-218)||(34610941-34610993)
chr3 (145-216)||(35127485-35127557)
chr3 (45-101)||(35394494-35394550)
chr3 (19-99)||(44014769-44014848)
[»] chr4 (18 HSPs)
chr4 (146-220)||(44863077-44863151)
chr4 (34-101)||(17822850-17822917)
chr4 (138-218)||(44138442-44138522)
chr4 (17-101)||(52315165-52315249)
chr4 (13-61)||(55437134-55437182)
chr4 (137-197)||(23277317-23277377)
chr4 (36-88)||(25332806-25332858)
chr4 (145-200)||(42641747-42641802)
chr4 (19-101)||(13126546-13126628)
chr4 (67-101)||(16199999-16200033)
chr4 (43-101)||(42685442-42685499)
chr4 (27-87)||(28615366-28615426)
chr4 (177-222)||(42404138-42404183)
chr4 (137-197)||(21731759-21731819)
chr4 (45-101)||(22662028-22662084)
chr4 (45-101)||(22666507-22666563)
chr4 (45-101)||(49202663-49202719)
chr4 (35-99)||(55414406-55414470)
[»] chr7 (22 HSPs)
chr7 (131-220)||(46139823-46139912)
chr7 (21-70)||(7241308-7241357)
chr7 (18-101)||(7244698-7244780)
chr7 (26-101)||(34035935-34036010)
chr7 (150-220)||(33128628-33128698)
chr7 (17-83)||(36537944-36538009)
chr7 (19-88)||(20526899-20526968)
chr7 (26-102)||(11048044-11048119)
chr7 (26-86)||(15740389-15740448)
chr7 (17-101)||(19022553-19022637)
chr7 (145-205)||(19718903-19718963)
chr7 (152-221)||(20428335-20428406)
chr7 (145-217)||(33552935-33553007)
chr7 (45-101)||(46139950-46140006)
chr7 (145-225)||(47795833-47795913)
chr7 (150-220)||(9210499-9210569)
chr7 (19-101)||(20526464-20526546)
chr7 (27-101)||(33678798-33678872)
chr7 (167-220)||(38138625-38138678)
chr7 (54-95)||(47559606-47559647)
chr7 (19-99)||(25670557-25670636)
chr7 (54-118)||(42656496-42656560)
[»] chr2 (34 HSPs)
chr2 (19-102)||(7928268-7928352)
chr2 (152-227)||(9395004-9395079)
chr2 (35-101)||(4606943-4607009)
chr2 (37-101)||(3611244-3611308)
chr2 (19-101)||(750688-750770)
chr2 (27-101)||(16451136-16451210)
chr2 (131-227)||(43570290-43570384)
chr2 (29-99)||(36043924-36043994)
chr2 (135-220)||(28792314-28792399)
chr2 (150-227)||(41407165-41407242)
chr2 (19-88)||(44606081-44606149)
chr2 (27-87)||(28677638-28677697)
chr2 (53-101)||(35379020-35379068)
chr2 (44-88)||(40682390-40682434)
chr2 (27-87)||(43570446-43570505)
chr2 (34-101)||(40279285-40279352)
chr2 (34-101)||(40279355-40279422)
chr2 (26-100)||(7035544-7035618)
chr2 (27-101)||(8017452-8017525)
chr2 (138-220)||(9174695-9174777)
chr2 (37-87)||(9174847-9174897)
chr2 (27-101)||(26143618-26143692)
chr2 (44-101)||(1625918-1625975)
chr2 (167-220)||(15757812-15757865)
chr2 (153-218)||(26626759-26626824)
chr2 (44-101)||(26626891-26626948)
chr2 (44-101)||(29316771-29316827)
chr2 (38-87)||(41809235-41809283)
chr2 (48-88)||(5365576-5365616)
chr2 (43-95)||(16398138-16398190)
chr2 (29-101)||(18066146-18066218)
chr2 (168-220)||(26143777-26143829)
chr2 (153-225)||(35379269-35379341)
chr2 (37-101)||(36114437-36114501)
[»] chr5 (24 HSPs)
chr5 (150-221)||(24030531-24030602)
chr5 (34-101)||(39105482-39105549)
chr5 (27-101)||(1464998-1465072)
chr5 (44-97)||(42099867-42099920)
chr5 (34-101)||(12459987-12460053)
chr5 (146-220)||(28776856-28776930)
chr5 (45-97)||(40848767-40848819)
chr5 (166-225)||(3520297-3520356)
chr5 (17-100)||(10639972-10640055)
chr5 (167-220)||(32372495-32372548)
chr5 (145-225)||(9202862-9202942)
chr5 (54-101)||(4014429-4014476)
chr5 (44-99)||(9202743-9202798)
chr5 (27-101)||(11700181-11700254)
chr5 (52-101)||(7319011-7319060)
chr5 (48-101)||(7984987-7985040)
chr5 (167-220)||(13697905-13697958)
chr5 (150-223)||(26005367-26005440)
chr5 (167-220)||(40426633-40426686)
chr5 (137-225)||(42100195-42100286)
chr5 (150-218)||(36797205-36797273)
chr5 (17-101)||(37611184-37611267)
chr5 (17-101)||(37787914-37787997)
chr5 (27-87)||(41535413-41535473)
[»] chr1 (34 HSPs)
chr1 (46-101)||(38503462-38503517)
chr1 (19-93)||(3887602-3887676)
chr1 (43-101)||(15784347-15784405)
chr1 (20-101)||(7136970-7137050)
chr1 (17-88)||(47498807-47498878)
chr1 (21-99)||(27145708-27145785)
chr1 (146-220)||(45975571-45975645)
chr1 (145-220)||(5894277-5894352)
chr1 (43-101)||(7069319-7069377)
chr1 (19-101)||(51695465-51695547)
chr1 (18-99)||(37473423-37473504)
chr1 (19-83)||(4481966-4482029)
chr1 (152-220)||(5720852-5720920)
chr1 (152-220)||(41195325-41195393)
chr1 (54-105)||(15361054-15361105)
chr1 (44-99)||(38116073-38116128)
chr1 (137-200)||(38116291-38116354)
chr1 (177-220)||(46423151-46423194)
chr1 (27-101)||(3233993-3234067)
chr1 (44-98)||(5886990-5887043)
chr1 (145-219)||(27146362-27146436)
chr1 (43-101)||(46252677-46252734)
chr1 (146-220)||(47498958-47499032)
chr1 (44-101)||(27820332-27820389)
chr1 (56-101)||(34290254-34290299)
chr1 (147-200)||(37841899-37841952)
chr1 (167-220)||(43990119-43990172)
chr1 (152-220)||(5741533-5741601)
chr1 (17-101)||(6102172-6102255)
chr1 (27-87)||(10199387-10199446)
chr1 (149-225)||(14331655-14331731)
chr1 (27-99)||(36514654-36514726)
chr1 (168-220)||(38247325-38247376)
chr1 (44-88)||(38480570-38480614)
[»] chr8 (17 HSPs)
chr8 (27-85)||(32840964-32841022)
chr8 (17-88)||(33808334-33808405)
chr8 (20-100)||(9956785-9956865)
chr8 (44-99)||(3536940-3536995)
chr8 (50-100)||(1113077-1113127)
chr8 (27-101)||(43504769-43504842)
chr8 (17-70)||(779030-779082)
chr8 (19-100)||(10120775-10120856)
chr8 (167-225)||(40980996-40981054)
chr8 (149-219)||(41475178-41475248)
chr8 (35-99)||(1058063-1058126)
chr8 (45-101)||(1930053-1930109)
chr8 (141-220)||(2833440-2833520)
chr8 (145-217)||(9956926-9956998)
chr8 (150-222)||(14956424-14956496)
chr8 (19-99)||(16162780-16162859)
chr8 (57-101)||(43717945-43717989)
[»] chr6 (14 HSPs)
chr6 (150-220)||(6538388-6538458)
chr6 (21-98)||(2455280-2455357)
chr6 (19-88)||(2735100-2735169)
chr6 (27-100)||(9912169-9912242)
chr6 (27-85)||(33832252-33832309)
chr6 (17-95)||(34910377-34910455)
chr6 (145-225)||(264247-264327)
chr6 (26-86)||(1575928-1575987)
chr6 (26-102)||(31624107-31624182)
chr6 (137-225)||(35069428-35069516)
chr6 (45-88)||(34882417-34882460)
chr6 (27-101)||(31813179-31813253)
chr6 (43-95)||(2455015-2455067)
chr6 (19-87)||(9027610-9027677)
[»] scaffold0608 (1 HSPs)
scaffold0608 (19-83)||(9608-9671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (170-220)||(6785-6835)
[»] scaffold0018 (1 HSPs)
scaffold0018 (162-220)||(157978-158036)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 47249439 - 47249836
Alignment:
Q  1 acataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47249439 acataaattaattgaaattgtttgaaagaacttatgaaaaccacttatgacat-gttcataagttgtttttggcttattttcataagtcctccaagatag 47249537  T
Q  101 ccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47249538 ccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttatacatgagcatttatcatgataagtgcttgtgttataagctgcaa 47249637  T
Q  201 ctaagctatttatccaaacaaggccaagatttttgtaaaaatacataacaacatttgtaagaatataaaaacagttgttgagggcttacgatgcaatgag 300  Q
     ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249638 ataagctatttatccacacaaggcctagatttttgtaaaaatacataacaacatttgtaagaatataaaaacagttgttgagggcttacgatgcaatgag 47249737  T
Q  301 catggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacagatgaagtgtctcggg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249738 catggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacagatgaagtgtctcggg 47249836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 390
Target Start/End: Original strand, 47242881 - 47242998
Alignment:
Q  273 agttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgta 372  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||   ||||||||||||| ||||||||    
T  47242881 agttgttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgta 47242980  T
Q  373 tgaaactgacagatgaag 390  Q
    |||||| || ||||||||    
T  47242981 tgaaacagagagatgaag 47242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 47254150 - 47254243
Alignment:
Q  285 cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaac 378  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||  ||| | || | |||||||||||||||||||||    
T  47254150 cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaac 47254243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 21367759 - 21367685
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||||  |||||||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagc 21367685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 35959585 - 35959657
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaag 222  Q
    ||||||||||| |||  ||||||||| ||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  35959585 agcttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaacaag 35959657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 34610784 - 34610858
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||||  ||||||||||||||||||||| |||||  ||| |||||||||||| | ||||||||||    
T  34610784 agaacttatgaaaactgcttatgacattgttcataagtggttttcagctgattttcataagttcgccaagatagc 34610858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 37389275 - 37389201
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| |||||||| ||||||||||||||||| | | || |||| ||||||| |||||||| ||||||||||||    
T  37389275 agaacttatgaaaacaacttatgacattgttcaaatgctgcttttagcttattctcataagtactccaagatagc 37389201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 3194250 - 3194301
Alignment:
Q  35 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 86  Q
    ||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||    
T  3194250 tgaaaacaacttatgacattgatcataagctgtttttagcttattttcataa 3194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 44747516 - 44747591
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||| ||||||||| || | ||| ||||  | |||||||||||||||| ||||| |||||||||||||||||||    
T  44747516 gaaataacttatacataagaacttaccatggtaggtgcttgtgttataagttgcaaataagctatttatccaaaca 44747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 31403432 - 31403373
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagccaa 104  Q
    |||| ||||||||||||||||||||   ||||||||||| | || |||||||||||||||    
T  31403432 ttataacattgttcataagttgtttacagcttattttcacaggttctccaagatagccaa 31403373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 33883755 - 33883802
Alignment:
Q  54 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  33883755 tgttcataagttgttttcagcttattttcataagttctctaagatagc 33883802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 47266027 - 47265980
Alignment:
Q  283 ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt 330  Q
    ||||||||||||||||  ||||||||||||||| ||||| ||||||||    
T  47266027 ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt 47265980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 402527 - 402593
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    ||||||||  |||||||||||||||||||| ||||||  ||||| ||||| |||| || ||||||||    
T  402527 atgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatag 402593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 2719568 - 2719486
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||| |||||| | |||||| |||||    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  2719568 tgtttgagagaacttaggaaaacaacttaaactattgtccataagttgttctcagcttattttcataagttctccaagatagc 2719486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 28240290 - 28240228
Alignment:
Q  137 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgca 199  Q
    ||||||| ||||||||||| | || |||| ||||||||| ||| ||||||| |||||||||||    
T  28240290 ttgctatcgaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 38902166 - 38902084
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||| | ||||||||  | |||||||||||||||| ||||||||   ||||||||||| ||| || |||||||||    
T  38902166 tgtttggaagaatttatgaaaacagcatatgacattgttcatacgttgttttcaacttattttcatgagttcttcaagatagc 38902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 46031063 - 46031009
Alignment:
Q  46 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    ||||||||| |||||||| ||||||  ||||||||| |||||| |||||||||||    
T  46031063 tatgacattattcataagctgttttcagcttattttaataagttctccaagatag 46031009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 12704123 - 12704172
Alignment:
Q  148 atagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 197  Q
    ||||||||||||  ||  |||||||||| |||||||||||||||||||||    
T  12704123 atagcttatacacaagtgtttatcatgataagtgcttgtgttataagctg 12704172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 30956772 - 30956825
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30956772 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 30972584 - 30972637
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30972584 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 46778169 - 46778241
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    |||||| |||||||| |||||||||||| |||||||||| | ||  ||||| ||||||||||  ||||||||||    
T  46778169 agaacttatgaaaacaacttatgacatttttcataagttttgttcagctta-tttcataagttgtccaagatag 46778241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 34610941 - 34610993
Alignment:
Q  166 tttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 218  Q
    |||||||||| ||| |||||||||||||||||||  |||| | ||||||||||    
T  34610941 tttatcatgataagcgcttgtgttataagctgcagataagttgtttatccaaa 34610993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 35127485 - 35127557
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaact-aagctatttatcca 216  Q
    |||||||| ||||||| |||| ||||||||| ||| |||| || |||||||||||| | ||||| ||||||||    
T  35127485 gaaatagcctatacataagcacttatcatgataagagcttatggtataagctgcaaatgaagctgtttatcca 35127557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 35394494 - 35394550
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||||||||| ||||||   ||||||||||||| | || |||||||||    
T  35394494 ttatgacattgttcataagctgttttcaacttattttcataaattcttcaagatagc 35394550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 44014769 - 44014848
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    ||||||| | |||| ||||||||  |||||||| | |||||||||||||  |||||||| ||| |||||| ||||||||||    
T  44014769 tgtttgagaaaacttatgaaaacagcttatgacct-gttcataagttgtcattggcttacttttataagttctccaagata 44014848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 44863077 - 44863151
Alignment:
Q  146 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  44863077 aaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 17822850 - 17822917
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||  ||||||||||| |||||||| | ||||| |||||||||||||||| ||||||||||||    
T  17822850 atgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagc 17822917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 44138522 - 44138442
Alignment:
Q  138 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 218  Q
    |||||| |||| ||||||||||| ||||  |||||||| ||||||||||  || ||||||||| |||||| ||||||||||    
T  44138522 tgctatagaaacagcttatacataagcaagtatcatgataagtgcttgtactaaaagctgcaaataagctgtttatccaaa 44138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 52315165 - 52315249
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||| ||||||| || ||||| |||||| ||||| ||||||||||| |||  ||||||||||||||||  ||||| |||||    
T  52315165 attgtttggaagaacttatcaaaacaacttatcacattattcataagttgctttcagcttattttcataagttttccaaaatagc 52315249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 55437182 - 55437134
Alignment:
Q  13 tgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 61  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  55437182 tgaaattgtttgaaagaacttatgaaaacaacttatgacgttgttcata 55437134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 23277377 - 23277317
Alignment:
Q  137 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 197  Q
    |||||||||| ||||||||||||| |||  ||||||| | ||||||||||| |||||||||    
T  23277377 ttgctattgagatagcttatacataagctcttatcattataagtgcttgtgctataagctg 23277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 25332858 - 25332806
Alignment:
Q  36 gaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    |||||| ||||||| |||| |||||||||||||||  ||||||||||||||||    
T  25332858 gaaaacaacttatggcattattcataagttgttttcagcttattttcataagt 25332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 42641747 - 42641802
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 200  Q
    |||||||||||||||| | || ||||||||| |||||||| ||| |||||||||||    
T  42641747 gaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaa 42641802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 13126546 - 13126628
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||| || |||||  |||||||||||  ||||||| | ||||  |||||||||||||||| ||| ||||||||    
T  13126546 tgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagc 13126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 16199999 - 16200033
Alignment:
Q  67 tttttggcttattttcataagtcctccaagatagc 101  Q
    ||||| |||||||||||||||||||||||||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagc 16200033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 42685499 - 42685442
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||| ||| ||||||||||||||||||||||||| | || |||||| |||||    
T  42685499 acttatgacat-gtttataagttgtttttggcttattttcacacgttctccaaaatagc 42685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 28615426 - 28615366
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgttttt-ggcttattttcataag 87  Q
    |||||| ||||||||  || |||||||| |||||||||||||||| ||||||||||||||||    
T  28615426 agaacttatgaaaacagctaatgacatt-ttcataagttgttttttggcttattttcataag 28615366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 42404138 - 42404183
Alignment:
Q  177 aagtgcttgtgttataagctgcaactaagctatttatccaaacaag 222  Q
    ||||||||||| |||||| ||||| ||||||||| |||||||||||    
T  42404138 aagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 42404183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 21731759 - 21731819
Alignment:
Q  137 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 197  Q
    |||||||  ||||||||||||| | |||| ||||||||| ||| ||||||| |||||||||    
T  21731759 ttgctataaaaatagcttatacgtaagcacttatcatgataagcgcttgtgctataagctg 21731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 22662084 - 22662028
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||| |||| |||||||||  ||||||| |||||||| ||||| ||||||    
T  22662084 ttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagc 22662028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 22666563 - 22666507
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||| |||| |||||||||  ||||||| |||||||| ||||| ||||||    
T  22666563 ttatgacattgatcatgagttgttttctgcttattgtcataagttctccatgatagc 22666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 49202719 - 49202663
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||| |||||||||||||||||||||   ||||||||||| |||  |||||||||||    
T  49202719 ttatcacattgttcataagttgttttcaacttattttcattagttatccaagatagc 49202663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 55414406 - 55414470
Alignment:
Q  35 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||||||  ||||||||||| |||||||| | ||||   ||||||||||||||| ||||||||||    
T  55414406 tgaaaacagcttatgacatttttcataagcttttttcaacttattttcataagttctccaagata 55414470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 46139912 - 46139823
Alignment:
Q  131 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||| |||||||| |||||||||||| || | || ||||||||| |||||||||||||||||||||||| |||| | |||| |||||||    
T  46139912 tatattttgctattaaaatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaaca 46139823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 7241308 - 7241357
Alignment:
Q  21 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 70  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  7241308 tttgaaaaaacttatgaaaacgacttatgacattgttcataagttgtttt 7241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 7244780 - 7244698
Alignment:
Q  18 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||| |||||| |||| | ||||||||| | ||||||||||||||  |||||||||||||||  |||||| |||||    
T  7244780 ttgtttgaaagagctgatggaaacaatttatgacat-gctcataagttgttttcagcttattttcataagctctccaatatagc 7244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 34036010 - 34035935
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||   |||||||||  |||| ||| ||||||||    
T  34036010 aagaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagatagc 34035935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 33128698 - 33128628
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||| ||| |||| ||||||||| ||||| ||||| | |||||||||| |||||| ||||||||||||    
T  33128698 agcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca 33128628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 36538009 - 36537944
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 83  Q
    ||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  36538009 attgtttgagagaacttatggaaacaacttatgacat-gttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 20526899 - 20526968
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    ||||||| |||||||||||||||  ||||||| |||||| ||||| | ||||  ||||||||||||||||    
T  20526899 tgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataagt 20526968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 11048119 - 11048044
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagcc 102  Q
    ||||||| || ||||| |||||||||| |||||||||| ||||||  ||||||| ||||||||| || |||||||||    
T  11048119 aagaacttatcaaaacaacttatgaca-tgttcataagctgttttcagcttattctcataagtcatcgaagatagcc 11048044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 15740389 - 15740448
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 86  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  15740389 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 19022553 - 19022637
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||  |||| | |||||||| |||||||||| | |||||||||||| ||   ||||||||||||||| |||||| |||||    
T  19022553 attgtttgggagaatttatgaaaacaacttatgacaattttcataagttgtcttcaacttattttcataagttctccaatatagc 19022637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 19718963 - 19718903
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaag 205  Q
    ||||||||||| |||  ||  |||||||||| |||||||||||||||||||||||| ||||    
T  19718963 gaaatagcttacacacaagtgtttatcatgataagtgcttgtgttataagctgcaattaag 19718903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 20428406 - 20428335
Alignment:
Q  152 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctat--ttatccaaacaa 221  Q
    ||||||||| |||  ||||||||| ||||| ||||| |||||||| ||||||||||||  ||||||||||||    
T  20428406 cttatacataagcgcttatcatgagaagtgtttgtgctataagctccaactaagctatacttatccaaacaa 20428335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 33552935 - 33553007
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaa 217  Q
    |||||||||||||||| |||  ||||||||  |||||||||||  ||||||||||| |||| | |||||||||    
T  33552935 gaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 46140006 - 46139950
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||| ||||| | |||||||| |||| ||||||||||| ||||||||||||    
T  46140006 ttatgacatttttcattacttgtttttagcttgttttcataagttctccaagatagc 46139950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 47795913 - 47795833
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    ||||||| |||||||| ||   ||||||||| ||| |||| || |||||||||||| |||||| |||||| ||||||||||    
T  47795913 gaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaataagctgtttatctaaacaaggcc 47795833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 9210569 - 9210499
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||| |||  ||||||||| || || ||| | |||||||||||| |||||| ||||||||||||    
T  9210569 agcttatacataagcgattatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaaca 9210499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 20526546 - 20526464
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||| |||||| ||||||||   |||| ||||| ||| |||| ||||||| |||||||||||| ||| |||||| |||||    
T  20526546 tgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagc 20526464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 33678872 - 33678798
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| |||||||| |||||| ||||||||||| || ||||||   |||||||||| ||||  |||||||||||    
T  33678872 agaacttatgaaaacaacttataacattgttcatgagatgttttcaacttattttcacaagttttccaagatagc 33678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 38138625 - 38138678
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||||||| ||||| ||||||  |||| |||||| ||||||||||||    
T  38138625 ttatcatgacaagtgattgtgctataagacgcaaataagctgtttatccaaaca 38138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 47559606 - 47559647
Alignment:
Q  54 tgttcataagttgtttttggcttattttcataagtcctccaa 95  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  47559606 tgttcataagttgttttcggctcattttcataagttctccaa 47559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 25670557 - 25670636
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    ||||||| | |||| |||||||| |||||||||| |||| |||| |||||||  ||||||||||| |||  ||||||||||    
T  25670557 tgtttgagaaaacttatgaaaacaacttatgaca-tgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 42656560 - 42656496
Alignment:
Q  54 tgttcataagttgtttttggcttattttcataagtcctccaagatagccaatacaaaaataattt 118  Q
    |||||||||  |||||  ||||||||||||||||  ||||||||||||  |||||||||| ||||    
T  42656560 tgttcataaaatgtttgcggcttattttcataagctctccaagatagcttatacaaaaatgattt 42656496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 7928268 - 7928352
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatg-acattgttcataagttgtttttggcttattttcataagtcctccaagatagcc 102  Q
    |||| |||||||||  |||||||  |||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  7928268 tgttagaaagaacttttgaaaacagcttatggacattgttcataagttgttttcagcttattttcataagttctccaagatagcc 7928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 9395079 - 9395004
Alignment:
Q  152 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 227  Q
    ||||||||||||  |||||||||| ||| ||||||| ||||||| |||| |||||||| |||||||||||||||||    
T  9395079 cttatacatgagtgtttatcatgataagagcttgtgctataagccgcaaataagctatgtatccaaacaaggccaa 9395004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 4607009 - 4606943
Alignment:
Q  35 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||| |||||||||||||||||| || || |||| |||||||||||||||| ||||||||||||    
T  4607009 tgaaaacaacttatgacattgttcatgagctgcttttagcttattttcataagttctccaagatagc 4606943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 3611308 - 3611244
Alignment:
Q  37 aaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||| |||||||||||| |||||||  ||||||| |||||||||||||||| ||||||||||||    
T  3611308 aaaacaacttatgacattattcataaactgtttttagcttattttcataagttctccaagatagc 3611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 750770 - 750688
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||| |||||||   || ||||||||||||||||| ||||||  |||||||| ||||||| ||||||||||||    
T  750770 tgtttgcaagaacttatgaaaagagctaatgacattgttcataagctgttttgagcttatttgcataagttctccaagatagc 750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 16451210 - 16451136
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| |||||||| |||||||||||||||||| || ||||||  |||||||||||  ||| ||||||||||||    
T  16451210 agaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagc 16451136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 43570384 - 43570290
Alignment:
Q  131 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 227  Q
    ||||| || |||| ||| ||||||||||| | ||  ||||||||| ||||||||||| |||||||||||| |||||| |||| ||||||| ||||||    
T  43570384 tatattttactatagaattagcttatacaagcgc--ttatcatgataagtgcttgtgctataagctgcaaataagctgtttacccaaacacggccaa 43570290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 36043994 - 36043924
Alignment:
Q  29 aactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||| ||| | |||||||||  ||||||||||    
T  36043994 aacttatgaaaacaacttacgacattgttcataagctgtttttagctcaatttcataagctctccaagata 36043924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 28792314 - 28792399
Alignment:
Q  135 tgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| | |||||||||||||| ||   || | |||| | ||||||||| |||||||||||| |||||| ||||||||||||    
T  28792314 tgttgctataggaatagcttatacataagtgattgtaatgataggtgcttgtgctataagctgcaagtaagctttttatccaaaca 28792399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 41407242 - 41407165
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 227  Q
    ||||||||||| ||   ||||||||| ||| ||||||| ||||||||||||  ||||| |||||||||||| ||||||    
T  41407242 agcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacagggccaa 41407165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 44606081 - 44606149
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    |||||| ||||||| |||||||| |||||||||| ||| |||||||||||||  ||| ||||||||||||    
T  44606081 tgtttggaagaacttatgaaaacaacttatgaca-tgtccataagttgttttcagctgattttcataagt 44606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 28677638 - 28677697
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  28677638 agaacttatgaaaacagcttatgacatt-ttcataagttgttttcggcttatttccataag 28677697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 35379020 - 35379068
Alignment:
Q  53 ttgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||||||    
T  35379020 ttgttcataagttgttttcagcttattttcataagctctccaagatagc 35379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 40682390 - 40682434
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  40682390 cttatgacattgttcataagttgttttcaacttattttcataagt 40682434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 43570505 - 43570446
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    |||||| ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||    
T  43570505 agaacttatgaaaacagcttatgacattgttcataagct-tttttagcttattttcataag 43570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 40279352 - 40279285
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279352 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 40279422 - 40279355
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279422 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 7035544 - 7035618
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    ||||||| ||| ||||  |||||||||  ||||||||| ||||||  ||||||||||||||||  ||||||||||    
T  7035544 aagaacttatggaaacagcttatgacacagttcataaggtgttttccgcttattttcataagttttccaagatag 7035618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 8017525 - 8017452
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||||  ||||||| || |||||||| |||||||  || ||||||||||||| ||||||||||||    
T  8017525 agaacttatgaaaacagcttatgatat-gttcataatttgttttctgcgtattttcataagttctccaagatagc 8017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 9174777 - 9174695
Alignment:
Q  138 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||| |||||||||||||||| ||  |||||||||| || ||||  | | ||||||||||| |||| | ||||||||||||    
T  9174777 tgctatagaaatagcttatacataagtgtttatcatgataaatgctaatctcataagctgcaaataagttgtttatccaaaca 9174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 9174897 - 9174847
Alignment:
Q  37 aaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    ||||| ||||||||||||||||||||| | ||||  |||||||||||||||    
T  9174897 aaaacaacttatgacattgttcataagctattttcagcttattttcataag 9174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 26143618 - 26143692
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| | |||||| ||||||| ||||||||| | ||| ||||  |||||||||||||||| ||||||| ||||    
T  26143618 agaacttacgaaaacaacttatgtcattgttcacaggttattttcagcttattttcataagttctccaagttagc 26143692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 1625975 - 1625918
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||| |||||||||| ||||||  ||| |||||| ||||| ||||||||||||    
T  1625975 cttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagc 1625918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 15757812 - 15757865
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| ||| ||||||| ||||||||| || |||||| ||||||||||||    
T  15757812 ttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaaca 15757865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 26626824 - 26626759
Alignment:
Q  153 ttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 218  Q
    |||||||| || ||||||||||| ||| |||| || |||||||||||| |||| | ||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 26626948 - 26626891
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||||||||||  ||||||  | |||||||||||||| || |||||||||    
T  26626948 cttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagc 26626891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 29316771 - 29316827
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||| ||||||||||| ||||  |||||||| ||||||| ||||||||||||    
T  29316771 cttatgacat-gttcataagttcttttcagcttatttccataagttctccaagatagc 29316827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 41809235 - 41809283
Alignment:
Q  38 aaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  41809235 aaacaacttatgacat-gttcataagttgtttttagcttatttccataag 41809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 5365576 - 5365616
Alignment:
Q  48 tgacattgttcataagttgtttttggcttattttcataagt 88  Q
    |||||||||||||||||||||||  ||||||||||| ||||    
T  5365576 tgacattgttcataagttgttttcagcttattttcacaagt 5365616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16398190 - 16398138
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaa 95  Q
    ||||||||||||| || |||| ||||||  |||||||||||||||| ||||||    
T  16398190 acttatgacattgctcgtaagctgttttcagcttattttcataagttctccaa 16398138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 18066218 - 18066146
Alignment:
Q  29 aactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||| ||||||||  |||||||||||| ||||||| | ||||   ||||||||| ||||| ||||||||||||    
T  18066218 aacttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagc 18066146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 26143777 - 26143829
Alignment:
Q  168 tatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||||  ||||||||||||||||| |||||| |||| | ||||||||||||    
T  26143777 tatcatggtaagtgcttgtgttataaactgcaaataagttgtttatccaaaca 26143829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 35379269 - 35379341
Alignment:
Q  153 ttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    |||||||| |||| ||||||||| | ||| ||||| |||||||| ||| ||||   |||||||||||||||||    
T  35379269 ttatacataagcacttatcatgaaacgtgtttgtgctataagctacaattaagtcgtttatccaaacaaggcc 35379341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 36114501 - 36114437
Alignment:
Q  37 aaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||| ||| |||| |||||||| ||| ||||||| ||||||||| |||||  ||||||||||||    
T  36114501 aaaacaactaatgaaattgttcaaaagctgtttttagcttatttttataagatctccaagatagc 36114437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 24030531 - 24030602
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaa 221  Q
    |||||||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||    
T  24030531 agcttatacacgcgcacttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaacaa 24030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 39105549 - 39105482
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||    
T  39105549 atgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagc 39105482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 1464998 - 1465072
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||||  |||||| ||||| ||||||||||||||  ||||||||||| |||||||||||||||||    
T  1464998 agaacttatgaaaacagcttatggcattgctcataagttgttttcagcttattttcacaagtcctccaagatagc 1465072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 42099867 - 42099920
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 97  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  42099867 cttatgacattgttcataagctgtttttggcttattttcataagttcttcaaga 42099920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 12459987 - 12460053
Alignment:
Q  34 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||  || |||||||||    
T  12459987 atgaaaacaacttatgacat-gttcatatgttgtttttggcttattttcataagctctgcaagatagc 12460053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 28776930 - 28776856
Alignment:
Q  146 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||||||| |||| ||||||||| ||||||||  | |||||||||||| |||| | ||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaaca 28776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 40848819 - 40848767
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 97  Q
    |||| ||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  40848819 ttatcacattgttcataagttgttttcgccttattttcataagttctccaaga 40848767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 3520356 - 3520297
Alignment:
Q  166 tttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    |||||||||||||||||||||| ||||||||| || |||| | |||||||||||| ||||    
T  3520356 tttatcatgacaagtgcttgtgctataagctgaaaataagttgtttatccaaacatggcc 3520297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 10640055 - 10639972
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    ||||||||  |||||| ||||||||  ||||||||||| |||||||| | ||| | |||||||||||||||| |||||| ||||    
T  10640055 attgtttgggagaacttatgaaaacagcttatgacatttttcataagctttttctagcttattttcataagttctccaaaatag 10639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 32372548 - 32372495
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| ||||||||||| |||||||||||| |||| | ||||||||||||    
T  32372548 ttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 9202862 - 9202942
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    ||||||||||||| || |||| ||||||||| ||   |||||| |||||||||||| |||| | |||||||||||| ||||    
T  9202862 gaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacagggcc 9202942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 4014429 - 4014476
Alignment:
Q  54 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagc 4014476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 9202743 - 9202798
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||||||||||||||||||| |||||   |||||||||||||||| || |||||||    
T  9202743 cttatgacattgttcataagctgtttccagcttattttcataagttcttcaagata 9202798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 11700254 - 11700181
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||| |||| |||||||||||||||||||| ||||||    ||||||||||||||| ||||| ||||||    
T  11700254 agaacttatggaaacaacttatgacattgttcataaattgtttcat-cttattttcataagttctccacgatagc 11700181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 7319011 - 7319060
Alignment:
Q  52 attgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  7319011 attgtccataagttgttctcagcttattttcataagttctccaagatagc 7319060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 7985040 - 7984987
Alignment:
Q  48 tgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||| ||||||||||| ||||||  |||||||||||||| | ||||||||||||    
T  7985040 tgacgttgttcataagctgttttcagcttattttcataaattctccaagatagc 7984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 13697905 - 13697958
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| || ||||| ||||||||||||||| |||| | ||||||||||||    
T  13697905 ttatcatgataaatgcttatgttataagctgcaaataagttgtttatccaaaca 13697958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 26005367 - 26005440
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaagg 223  Q
    ||||||||||| |||| ||||||| | ||||| ||||| |||||||| | | |||| | |||||||||||||||    
T  26005367 agcttatacataagcaattatcataataagtgtttgtgctataagcttctaataagttgtttatccaaacaagg 26005440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 40426686 - 40426633
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| ||||||||||| |||||||||||| | || | ||||||||||||    
T  40426686 ttatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaaca 40426633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 42100286 - 42100195
Alignment:
Q  137 ttgctattgaaatagcttataca---tgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    ||||||| ||||||||| |||||   | ||| ||||| || | ||| ||||||| |||||||||||| |||| |||||||||||||| ||||    
T  42100286 ttgctatcgaaatagctgatacaacataagcgtttattattataagcgcttgtgatataagctgcaaataagttatttatccaaacagggcc 42100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 36797205 - 36797273
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 218  Q
    ||||||||||| |||| |||| |||| ||||||||||| |||||| ||||| ||| || |||| |||||    
T  36797205 agcttatacataagcagttataatgataagtgcttgtgctataagttgcaaataaactgtttacccaaa 36797273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 37611184 - 37611267
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||| ||| || |||||||| |||| |||||| ||||||||| ||||||  | |||||| ||||||  ||||||||||||    
T  37611184 attgtttgagagagcttatgaaaacaacttgtgacat-gttcataagctgttttcaggttatttccataagctctccaagatagc 37611267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 37787914 - 37787997
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||| ||| || |||||||| |||| |||||| ||||||||| ||||||  | |||||| ||||||  ||||||||||||    
T  37787914 attgtttgagagagcttatgaaaacaacttgtgacat-gttcataagctgttttcaggttatttccataagctctccaagatagc 37787997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 41535473 - 41535413
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    |||||| |||||||| |||||||||||||||| || | ||||||  |||||| ||||||||    
T  41535473 agaacttatgaaaacaacttatgacattgttcgtacgatgttttccgcttatattcataag 41535413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 38503462 - 38503517
Alignment:
Q  46 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  38503462 tatgacattgttcataagttgttttcagcttattttcataagttctccaagatagc 38503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 3887602 - 3887676
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctcc 93  Q
    |||||| ||||||| ||||||||  |||||||||||||||||||| |||||||  ||||||||||||||| ||||    
T  3887602 tgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttttaacttattttcataagttctcc 3887676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 15784405 - 15784347
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  15784405 acttatgacattgttcacaagttgtttttagcttattttcacaagttctccaagatagc 15784347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 7136970 - 7137050
Alignment:
Q  20 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||| ||||||| | ||||||||||  |||||||||| ||||  |||||||||||||||| ||||||||||||    
T  7136970 gtttgaaagaacttatgaaaatcgcttatgacata-ttcataagttattttcagcttattttcataagttctccaagatagc 7137050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 47498807 - 47498878
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  47498807 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 47498878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 27145708 - 27145785
Alignment:
Q  21 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||| ||||  |||||||||||||||| || |||||||    
T  27145708 tttggaagaacttaagaaaacgacttatgacattgttcataagtt-ttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 45975645 - 45975571
Alignment:
Q  146 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||| |||||||| ||   ||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||    
T  45975645 aaatagtttatacataagggcttatcatgataagtgtttgtgttataagctacaaataagctatttatccaaaca 45975571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 5894277 - 5894352
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||||||||||||| |||  ||||||||| |||  |||||| |||||||| ||| |||||| ||||||||||||    
T  5894277 gaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaaca 5894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 7069377 - 7069319
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||||||||||| ||||||||   | |||||||||||| ||||||||||||    
T  7069377 acttatgacattgttcataatttgtttttaattcattttcataagttctccaagatagc 7069319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 51695465 - 51695547
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| ||||||| ||  |||| |||||| |||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  51695465 tgtttggaagaacttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagc 51695547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 37473504 - 37473423
Alignment:
Q  18 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||||||  ||||||  ||||||| |||||||||||| |||||||| | |||   |||||||||||||||| ||||||||||    
T  37473504 ttgtttgggagaacttttgaaaacaacttatgacatttttcataagctttttccagcttattttcataagttctccaagata 37473423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 4482029 - 4481966
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 83  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  4482029 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 5720920 - 5720852
Alignment:
Q  152 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| |||  ||||||||| | |||||||||||||||||  ||| |||| ||||||||||||||    
T  5720920 cttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataagatatttatccaaaca 5720852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 41195325 - 41195393
Alignment:
Q  152 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| |||  |||||| || ||| ||||||| |||||||||||| |||| ||||||||||||||    
T  41195325 cttatacataagcgattatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 15361105 - 15361054
Alignment:
Q  54 tgttcataagttgtttttggcttattttcataagtcctccaagatagccaat 105  Q
    |||||||||||||||||  |||||||||||||||  ||||| ||||||||||    
T  15361105 tgttcataagttgttttcagcttattttcataagctctccaggatagccaat 15361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 38116073 - 38116128
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    ||||||||||||||| ||||||||||   ||||| |||||||||| ||||||||||    
T  38116073 cttatgacattgttcctaagttgtttccagcttactttcataagttctccaagata 38116128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 38116291 - 38116354
Alignment:
Q  137 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 200  Q
    |||||||||||||||||||||||| |||  ||||||||| ||| || |||  ||||||||||||    
T  38116291 ttgctattgaaatagcttatacataagcgcttatcatgataagcgcatgtactataagctgcaa 38116354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 46423194 - 46423151
Alignment:
Q  177 aagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  46423194 aagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 3233993 - 3234067
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| |||||||| |||||| ||| | |||||||||| ||||   ||||||||||||||| |||||| |||||    
T  3233993 agaacttatgaaaacaacttataacagttttcataagtttttttctacttattttcataagttctccaatatagc 3234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 98  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||| |||||||||    
T  5886990 cttatgacat-gttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 27146362 - 27146436
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 219  Q
    |||||| ||||||||| | |  ||||||||| | || ||| || |||||||||||| ||||||||||||||||||    
T  27146362 gaaataccttatacataaacgcttatcatgatatgtacttatgctataagctgcaaataagctatttatccaaac 27146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 46252677 - 46252734
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||| ||||||||||||||||  | |||||||||||||  ||||||||||||    
T  46252677 acttatgacat-gttcataagttgttttcaggttattttcataagctctccaagatagc 46252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 47498958 - 47499032
Alignment:
Q  146 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||||||  |||  ||||||||| |||  |||||| |||||||||||| |||| | ||||||||||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 27820332 - 27820389
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||| ||||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  27820332 cttacgacattgttcataagctattttcagcttattttcataaattctccaagatagc 27820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 34290299 - 34290254
Alignment:
Q  56 ttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||||||||||||  |||||||||||||||| || |||||||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagc 34290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 37841952 - 37841899
Alignment:
Q  147 aatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 200  Q
    ||||||||||||||||| | ||||||||| |||||||| || ||| ||||||||    
T  37841952 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaa 37841899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 43990172 - 43990119
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||||  ||||||| ||||| |||||| || ||||||||||||||||    
T  43990172 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 43990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 5741601 - 5741533
Alignment:
Q  152 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||| |||  ||||||||| | ||||||||| |||||||  ||| |||| ||||||||||||||    
T  5741601 cttatacataagcgcttatcatgataggtgcttgtgctataagccacaaataagatatttatccaaaca 5741533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 6102255 - 6102172
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||  |||||| ||||||||  ||||||| ||||||||||| |||||||  |||||||| ||||| | |||| |||||||    
T  6102255 attgtttgggagaact-atgaaaacagcttatgatattgttcataaattgttttcagcttatttccataaattctcccagatagc 6102172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 10199387 - 10199446
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    |||||| |||||||   |||||||||| ||||||||||||||||  |||||||||||||||    
T  10199387 agaactcatgaaaatagcttatgacat-gttcataagttgttttcagcttattttcataag 10199446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 14331731 - 14331655
Alignment:
Q  149 tagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    |||||||||||| ||   ||||||||| ||| ||||||| |||||||| ||| |||||| |||||| ||||| ||||    
T  14331731 tagcttatacataagtgcttatcatgagaagcgcttgtgctataagcttcaaataagctgtttatctaaacagggcc 14331655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 36514654 - 36514726
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||||| |||||||  ||||||||||||||| | ||| ||||||  |||| |||||||||||  |||||||||    
T  36514654 agaacttatgaaaataacttatgacattgtttagaagctgttttcagctttttttcataagtaatccaagata 36514726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 38247376 - 38247325
Alignment:
Q  168 tatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||||| ||||||||||| |||||||||||| | |||| ||||||||||||    
T  38247376 tatcatgataagtgcttgtgctataagctgcaaat-agctgtttatccaaaca 38247325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 38480570 - 38480614
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||    
T  38480570 cttatgacattgctcataaactgtttttagcttattttcataagt 38480614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 32840964 - 32841022
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 85  Q
    |||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  32840964 agaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 33808405 - 33808334
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  33808405 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 33808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 9956785 - 9956865
Alignment:
Q  20 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    |||||| |||||| |||||||    ||||| |||||||||||||| |||||  |||||||||||||||| |||||||||||    
T  9956785 gtttgagagaacttatgaaaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatag 9956865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 3536940 - 3536995
Alignment:
Q  44 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  3536940 cttatgacattgttcataaattgttttcagcttatttccataagttctccaagata 3536995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 1113127 - 1113077
Alignment:
Q  50 acattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    |||||||||||||| ||||||| ||| |||||||||||| |||||||||||    
T  1113127 acattgttcataagctgtttttagctaattttcataagttctccaagatag 1113077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 43504842 - 43504769
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||  |||||||| ||||||| ||||||||||||    
T  43504842 agaactgatgaaaacaacttacgac-ttgtttataagctgttttcagcttatttccataagttctccaagatagc 43504769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 779030 - 779082
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 70  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||||||||||    
T  779030 attgtttgaaagaacttacgaaaacaacttatgaca-tgttcataagttgtttt 779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 10120856 - 10120775
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    ||||||| |||||| ||||||||  |||||||||||  ||||| | ||||||  |||||||||||||||| |||||| ||||    
T  10120856 tgtttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctccaatatag 10120775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 40981054 - 40980996
Alignment:
Q  167 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    |||||| || ||| ||||||| |||||||||||| |||||| |||||||||||| ||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacagggcc 40980996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 41475178 - 41475248
Alignment:
Q  149 tagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 219  Q
    |||||||||||| ||   ||||||||||||||| |||| ||||||| ||||| |||| | |||||||||||    
T  41475178 tagcttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaataagttgtttatccaaac 41475248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 1058063 - 1058126
Alignment:
Q  35 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    |||||||  ||||||||||| ||||| |||| ||||  |||||||||||||||| ||||||||||    
T  1058063 tgaaaactgcttatgacatttttcattagtt-ttttccgcttattttcataagttctccaagata 1058126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 1930109 - 1930053
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||||||||||||||| ||||||  ||||||||||| |||  | ||||||||||    
T  1930109 ttatgacattgttcataagctgttttcagcttattttcacaaggtcaccaagatagc 1930053  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 2833440 - 2833520
Alignment:
Q  141 tattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgc-aactaagctatttatccaaaca 220  Q
    |||||||||||||||| ||| |||| ||||||||| |||  ||| || |||||||||| || |||||  ||||||||||||    
T  2833440 tattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagtttatccaaaca 2833520  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 9956926 - 9956998
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaa 217  Q
    ||||||||| | |||| ||| | |||||||| ||||||||||| |||||||| ||| |||| | |||||||||    
T  9956926 gaaatagctcaaacataagcgtgtatcatgataagtgcttgtgctataagctacaaataagttgtttatccaa 9956998  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 14956424 - 14956496
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaag 222  Q
    ||||||||||| ||   ||||||||| ||| | ||||| |||||||||||| |||| | ||||||||||||||    
T  14956424 agcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaataagttgtttatccaaacaag 14956496  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 16162859 - 16162780
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 99  Q
    ||||||| | |||| ||||||||  |||||||| | |||||||||||||  |||||||| ||| |||||| ||||||||||    
T  16162859 tgtttgagaaaacttatgaaaacagcttatgacct-gttcataagttgtcattggcttacttttataagttctccaagata 16162780  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 43717945 - 43717989
Alignment:
Q  57 tcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    ||||||| ||||||| ||||| |||||||||| ||||||||||||    
T  43717945 tcataagctgtttttagcttactttcataagttctccaagatagc 43717989  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 6538458 - 6538388
Alignment:
Q  150 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    ||||||||||| |||  ||||||| | ||||||||||| |||||||||||| |||||||||||||||||||    
T  6538458 agcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 2455357 - 2455280
Alignment:
Q  21 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 98  Q
    ||||| |||||| |||||||| |||||| |||||||| ||||||||||||  ||||||||||| || | |||||||||    
T  2455357 tttgagagaacttatgaaaacaacttattacattgtttataagttgttttcagcttattttcacaacttctccaagat 2455280  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 2735169 - 2735100
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    ||||||| | |||| ||||||||  ||||||||||| |||||||| |||||| |||||||||||||||||    
T  2735169 tgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagt 2735100  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 9912169 - 9912242
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 100  Q
    |||||| |||||| |  |||||||||||||||||||| ||||||  |||||||||||||||| |||||| ||||    
T  9912169 agaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaatatag 9912242  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 33832252 - 33832309
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 85  Q
    |||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||    
T  33832252 agaacttatgaaaacaacttatgacat-gtttataagttgtttttagcttattttcata 33832309  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 34910377 - 34910455
Alignment:
Q  17 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaa 95  Q
    |||||||| |||||   ||||||||  ||||||||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  34910377 attgtttggaagaaactatgaaaacagcttatgacattgttcatgagttgttttccgcttactttcataagttctccaa 34910455  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 264327 - 264247
Alignment:
Q  145 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    ||||||||||||| || |||| ||||||||| |||  |||||| |||||||||||| | |||| || ||||||||| ||||    
T  264327 gaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaattagctgttaatccaaacagggcc 264247  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 1575987 - 1575928
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 86  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  1575987 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 1575928  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 31624182 - 31624107
Alignment:
Q  26 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagcc 102  Q
    ||||||| ||||||||  |||||||||| ||||||||| ||||||   ||||||||||||| | |||||||||||||    
T  31624182 aagaacttatgaaaacagcttatgacat-gttcataagctgttttcaacttattttcataatttctccaagatagcc 31624107  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 35069516 - 35069428
Alignment:
Q  137 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 225  Q
    |||||||  ||||||||||| ||| |||| ||||||||| ||  ||||||| |||||||||||| |||| | |||||| ||||| ||||    
T  35069516 ttgctatataaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacagggcc 35069428  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 34882417 - 34882460
Alignment:
Q  45 ttatgacattgttcataagttgtttttggcttattttcataagt 88  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  34882417 ttatgacattgttcataagttgttttccacttattttcataagt 34882460  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31813253 - 31813179
Alignment:
Q  27 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 101  Q
    |||||| |||||||   ||||||| ||||||||||||  |||||  ||||||||||||| || ||||||||||||    
T  31813253 agaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcatatgttctccaagatagc 31813179  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 2455067 - 2455015
Alignment:
Q  43 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaa 95  Q
    ||||||||||||||||||||  ||||||  |||||||||||| ||| ||||||    
T  2455067 acttatgacattgttcataacctgttttcagcttattttcattagttctccaa 2455015  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 9027677 - 9027610
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 87  Q
    ||||||||||| || ||| |||  ||||||||||| || |||||||||||||  |||||||||||||||    
T  9027677 tgtttgaaagagcttatggaaataacttatgacat-gtccataagttgttttcagcttattttcataag 9027610  T

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Target: scaffold0608 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 9608 - 9671
Alignment:
Q  19 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 83  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  9608 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 9671  T

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Target: scaffold0699 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 6835 - 6785
Alignment:
Q  170 tcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||||| ||||||||||| | |||||||||| ||||| |||||||||||||    
T  6835 tcatgataagtgcttgtgctctaagctgcaaataagcaatttatccaaaca 6785  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 158036 - 157978
Alignment:
Q  162 agcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 220  Q
    |||| ||||||| | ||||| ||||| |||||||||||| |||||| ||||||||||||    
T  158036 agcaattatcatcataagtgtttgtgctataagctgcaaataagctgtttatccaaaca 157978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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