View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14439_low_16 (Length: 417)
Name: NF14439_low_16
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 5111954 - 5112341
Alignment:
| Q |
12 |
gagatgaactatgtgcaagtttcaattttcaagcattgcaactggattgagaagcttccctagaacgagtatgaaacctccaagtgaaaacatagtccct |
111 |
Q |
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| T |
5111954 |
gagaagaactatgtgcaagtttcaattttcaagcattgcaactggattgagaagcttccctagaacgagtatgaaacctccaagtgaaaacatagtccct |
5112053 |
T |
|
| Q |
112 |
tgattgatcacaacacaacttgataacatcacaaaaagcattcacacaatttttcttctgtccattattttcccattcaatcctcacccaacaagaaaat |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5112054 |
tgattgatcacaacacaacttgacaacatcacaaaaagcattcacacaatttttcttctgtccattattttcccattcaatcctcacccaacaagagaaa |
5112153 |
T |
|
| Q |
212 |
ccatttgaagaaattggtatatttgaagaatcagaaagttgcaatgttacctcaccactaatcctcttgcatgatgaaccacattgaatttcaagccaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112154 |
ccatttgaagaaattggtatatttgaagaatcagaaagttgcaatgttacctcaccactaatcctcttgcatgatgaaccacattgaatttcaagccaag |
5112253 |
T |
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| Q |
312 |
gacattctggttgacccaccatttctttgtaagctgaatttgccatcctaactctgttgtttgaatctgaaatgacagctggcaattc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112254 |
gacattctggttgacccaccatttctttgtaagctgaatttgccatcctaactctgttgtttgaatctgaaatgacagctggcaattc |
5112341 |
T |
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