View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14439_low_18 (Length: 415)
Name: NF14439_low_18
Description: NF14439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14439_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 53090725 - 53090342
Alignment:
| Q |
17 |
aagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090725 |
aagatgaataagaataaagagggtgtgatgctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattat |
53090626 |
T |
|
| Q |
117 |
tcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090625 |
tcggtgataaagttttagctggagagctctatgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatc |
53090526 |
T |
|
| Q |
217 |
aaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatg-a |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090525 |
aaaatggttaattacttgaattatttaaatcaccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatgtt |
53090426 |
T |
|
| Q |
316 |
nnnnnnnngaaacagggtacaaactacaagtgcagattgtcatcaattttgcagagtgtgtcatgtgcttgcttgtatttgtgtc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090425 |
ttttttttgaaacagggtacaaactacaagtgcagattgtcatcaa-tttgcagagtgtgtcatgtgcttgcttgtatttgtgtc |
53090342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University